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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataatacaaaaccccatcattttttttctcaatatcaaagtacttttcccacattcacgtgatttacttttgtctttttccttctaaaaaattcaaacttttttctatgcttatctttaattaattagtagtaatctgatttctttttgtcttacatatcacagGAGGGCTACTAGTGAAGACTGGAGGGAGTAACATGCAACATGTAACATCACTATCTTTCCTCCTATTGGCTTACTCTAATTATCTGAGCCATGCCAAAAA

Basic information

species Arabidopsis thaliana
transcript AT1G70710.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164024694|gb|ES169015.1|ES169015
EST:     TGGAATTTCTCACCCCCAAGTCCAATACTCTCGAG                         GAGGGCTTACTAGTGAAGACTGGAGGGTAGTAACATGCAACATGTAACATC
genomic: TGGAATTTCTCACCCCCAAGTCCAATACTCTCGAGgtaataatac ... catatcacagGAGGGCT-ACTAGTGAAGACTGGAGGG-AGTAACATGCAACATGTAACATC
EST: gi|86069494|gb|DR365251.1|DR365251
EST:     CTGTTCTATATTGCCTGGAATTTCTCACCCCCAAGTCCAATACTCTCGAG                         GAGGGCTACTAGTGAAGACTGGAGGNAGTAACATGCAACATGTAACATCAC
genomic: CTGTTCTATATTGCCTGGAATTTCTCACCCCCAAGTCCAATACTCTCGAGgtaataatac ... catatcacagGAGGGCTACTAGTGAAGACTGGAGGGAGTAACATGCAACATGTAACATCAC
EST: gi|164178260|gb|ES061638.1|ES061638
EST:     CCTGGAATTTCTCACCCCCCAAGTCCAATACTCTCGAG                         GAGGGCTACTAGTGAAGACTGGAGGGAGTAACATGCAACATGTAACATCAC
genomic: CCTGGAATTTCTCA-CCCCCAAGTCCAATACTCTCGAGgtaataatac ... catatcacagGAGGGCTACTAGTGAAGACTGGAGGGAGTAACATGCAACATGTAACATCAC
EST: gi|164197905|gb|EL982616.1|EL982616
EST:     CTGTTCTATATTGCCTGGAATTTCTCACCCCCAAGTCCAATACTCTCGAG                         GACGGGCTACTAGTGAAGACTGGAGGGAGTAACATGC
genomic: CTGTTCTATATTGCCTGGAATTTCTCACCCCCAAGTCCAATACTCTCGAGgtaataatac ... catatcacagGA-GGGCTACTAGTGAAGACTGGAGGGAGTAACATGC
EST: gi|164038597|gb|ES101658.1|ES101658
EST:     CTGTTCTATATTGCCTGGAATTTCTCACCCCCAAGTCCAATACTCTCGAG                         GAGGGCTACTA
genomic: CTGTTCTATATTGCCTGGAATTTCTCACCCCCAAGTCCAATACTCTCGAGgtaataatac ... catatcacagGAGGGCTACTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttatctttaattaattagtagtaatctgatttctttttgtcttacatatcacagGAGGGCTACTAGTGAAGACTGGAGGGAGTAACATGCAACATGTAACATCACTATCTTTCCTCCTATTGGCTTACTCTAATTATCTGAGCCATGCCAAAAA
                                       gtcttac  putative branch site (score: 3)
                              tttctttttgtcttac  CT-rich tract
      tttaattaattagtag  TA-rich tract