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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTCGCTGGTGAAACCGCAGCCGCTTTAGCCGCCGCTTCAATCGTTTTTAGAAAACGCGATCCTGCTTATTCCAGACTTCTACTTGACCGTGCCACTAGGgtacgttactctgttttcacactttaaccattagcattaactgtggtaattaattttaattattacaaacattttaatattctctttgtttttctttaat...

Basic information

species Arabidopsis thaliana
transcript AT1G70710.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86069494|gb|DR365251.1|DR365251
EST:     GAAAACGCGATCCTGCTTATTCCAGACTTCTACTTGACCGTGCCACTAGG                         GTATTCGCGTTTGCTAACAGATATCGCGGCGCGTATAGTAACAGTCTCTAC
genomic: GAAAACGCGATCCTGCTTATTCCAGACTTCTACTTGACCGTGCCACTAGGgtacgttact ... ttgatcgcagGTATTCGCGTTTGCTAACAGATATCGCGGCGCGTATAGTAACAGTCTCTAC
EST: gi|125265699|gb|EL279784.1|EL279784
EST:     GAAAACGCGATCCTGCTTATTCCAGACTTCTACTTAACCGTGCCACTAGG                         GTATTCGCGTTT
genomic: GAAAACGCGATCCTGCTTATTCCAGACTTCTACTTGACCGTGCCACTAGGgtacgttact ... ttgatcgcagGTATTCGCGTTT
EST: gi|86069495|gb|DR365252.1|DR365252
EST:     NNAAACGCGATCCTGCTTATTCCAGACTTCTACTTGACCGGGCCACTAGG                         GGTATTCGCGTTGGCTAACAGATATCGCGGCGCGTATAGTA
genomic: GAAAACGCGATCCTGCTTATTCCAGACTTCTACTTGACCGTGCCACTAGGgtacgttact ... ttgatcgcagG-TATTCGCGTTTGCTAACAGATATCGCGGCGCGTATAGTA
EST: gi|163993310|gb|ES173853.1|ES173853
EST:     AAAACGCGATCCTGCTTATTCCAGACTTCTACTTGACCGTGCCACTAGG                         GTATTCGCGTTTGCTAACAGATATCGCGGCGCGTATAGTAACAGTCTCTAC
genomic: AAAACGCGATCCTGCTTATTCCAGACTTCTACTTGACCGTGCCACTAGGgtacgttact ... ttgatcgcagGTATTCGCGTTTGCTAACAGATATCGCGGCGCGTATAGTAACAGTCTCTAC
EST: gi|86069497|gb|DR365254.1|DR365254
EST:     GAAAACGCGATCCTGCTTATTCCAGACTTCTACTTGACCGTGCCACTAGG                         GTATTCGCGTTTGC
genomic: GAAAACGCGATCCTGCTTATTCCAGACTTCTACTTGACCGTGCCACTAGGgtacgttact ... ttgatcgcagGTATTCGCGTTTGC
EST: gi|164095125|gb|EL986493.1|EL986493
EST:     GCTTATTCCAGACTTCTACTTGACCGTGCCACTAGG                         GTATTCGCGTTTGCTAACAGATATCGCGGCGCGTATAGTAACAGTCTCTAC
genomic: GCTTATTCCAGACTTCTACTTGACCGTGCCACTAGGgtacgttact ... ttgatcgcagGTATTCGCGTTTGCTAACAGATATCGCGGCGCGTATAGTAACAGTCTCTAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGTCGCTGGTGAAACCGCAGCCGCTTTAGCCGCCGCTTCAATCGTTTTTAGAAAACGCGATCCTGCTTATTCCAGACTTCTACTTGACCGTGCCACTAGGgtacgttactctgttttcacactttaaccattagcattaactgtggtaattaattttaattattacaaacattttaatattctctttgtttttctttaat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tacaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctcttt