Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttcacatggcgctctgtctcaaggcccttgttctttcttgttatttatatttagtctttgtctttatagtgtttttttgcttcttgttttgaaattacagGAAGTGTTAATGGGAAAAGCAGAGTATTTTGAGTCTTTCAAGCAGAACGCAGATGGGTTTATCTGTTCTATATTGCCTGGAATTTCTCACCCCCAAGTCC

Basic information

species Arabidopsis thaliana
transcript AT1G70710.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G70710.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA08G04840.1 (Glycine max), 3'ss of exon 4
-------ttcacatggcgctctgtctcaaggcccttgttctttcttgttatttatatttagtctttgtctttatagtgtttttttgcttcttgttttgaaattacagGAAGTGTTAATGGGAAAAGCAGAGTATTTTGAGTCTTTCAAGCAGAACGCAGATGGGTTTATCTGTTCTATATTGCCTGGAATTTCTCACCCCCAAGTCC
          || |  |  | | |    |   ||||       |     || ||     | | || ||   |  | | | ||  |   |||| ||||     |  |||| ||||||||||||| |||||| ||||||| ||| ||||| || ||||| ||||| ||||||||||||| ||||||||||||||||||||| ||||| |
tattactaatacttaacagtattttgtcaccaccttaaaagggcaaacaatctaatcgaaatattggtgaattgaatatattcat---tcttatttt----ctgtagGAGGTGTTAATGGGAAGAGCAGACTATTTTGCGTCGTTCAAACAAAACGCTGATGGATTTATCTGTTCTACATTGCCTGGAATTTCTCACCCTCAAGTTC

upper sequence: AT1G70710.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA05G34850.1 (Glycine max), 3'ss of exon 4
ttcacatggcgctctgtctcaaggcccttgttctttcttgttattt--atatttagtctt-tgtctttatagtgt-ttttttgcttcttgttttgaaattacagGAAGTGTTAATGGGAAAAGCAGAGTATTTTGAGTCTTTCAAGCAGAACGCAGATGGGTTTATCTGTTCTATATTGCCTGGAATTTCTCACCCCCAAGTCC
|| |      ||||     || |   ||| || | |  | |||       |   | |||  | ||  |  ||||  | | ||  ||||| ||||     |  |||| ||| ||||||||| |||||| ||||||| ||| ||||| || ||||| ||||| ||||||||||||| ||||||||||||||||||||| ||||| |
ttgaggaacggctcatgtacatgttacttattttgttatcttaaaagggcaaacaatctaatatcggtgaagtgaatatattcattcttatttt----ctgtagGAGGTGCTAATGGGAAGAGCAGAATATTTTGCGTCCTTCAAACAAAACGCTGATGGATTTATCTGTTCTACATTGCCTGGAATTTCTCACCCTCAAGTTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164028413|gb|ES104602.1|ES104602
EST:     TAATCTCCAAG                         GAAGTGTTAATGGGAAAAGCAGAGTATTTTGAGTCTTTCAAGCAGAACGCA
genomic: TAATCTCCAAGgtaaccatct ... gaaattacagGAAGTGTTAATGGGAAAAGCAGAGTATTTTGAGTCTTTCAAGCAGAACGCA
EST: gi|86069494|gb|DR365251.1|DR365251
EST:     AGTTTGGTTGGGACAATAAGCATGCTGGGATTAATGTCTTAATCTCCAAG                         GAAGTGTTAATGGGAAAAGCAGAGTATTTTGAGTCTTTCAAGCAGAACGCA
genomic: AGTTTGGTTGGGACAATAAGCATGCTGGGATTAATGTCTTAATCTCCAAGgtaaccatct ... gaaattacagGAAGTGTTAATGGGAAAAGCAGAGTATTTTGAGTCTTTCAAGCAGAACGCA
EST: gi|164184295|gb|ES018270.1|ES018270
EST:     AGTTTGGTTGGGACAATAAGCATGCTGGGATTAATGTCTTAATCTCCAAG                         GAAGTGTTAATGGGAAGAGCAGA
genomic: AGTTTGGTTGGGACAATAAGCATGCTGGGATTAATGTCTTAATCTCCAAGgtaaccatct ... gaaattacagGAAGTGTTAATGGGAAAAGCAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatatttagtctttgtctttatagtgtttttttgcttcttgttttgaaattacagGAAGTGTTAATGGGAAAAGCAGAGTATTTTGAGTCTTTCAAGCAGAACGCAGATGGGTTTATCTGTTCTATATTGCCTGGAATTTCTCACCCCCAAGTCC
                 tttatagtgttttttt  TA-rich tract