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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAAAGCAGAGTATTTTGAGTCTTTCAAGCAGAACGCAGATGGGTTTATCTGTTCTATATTGCCTGGAATTTCTCACCCCCAAGTCCAATACTCTCGAGgtaataatacaaaaccccatcattttttttctcaatatcaaagtacttttcccacattcacgtgatttacttttgtctttttccttctaaaaaattcaaacttttttctatgcttatctttaattaattagtagtaatctgatttctttttgtcttacatatcacag

Basic information

species Arabidopsis thaliana
transcript AT1G70710.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G70710.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA05G34850.1 (Glycine max), 5'ss of exon 5
GGAAAAGCAGAGTATTTTGAGTCTTTCAAGCAGAACGCAGATGGGTTTATCTGTTCTATATTGCCTGGAATTTCTCACCCCCAAGTCCAATACTCTCGAGgtaataatacaaaac-cccatcattttttttct--caatatcaaagtacttttcccacattcacgtgatttacttttgtctttttccttctaaaaaattcaaactttttt-ctatgcttatctttaattaattagtagtaatctgatttctttttgtcttacatatcacag--------------------------
|||| |||||| ||||||| ||| ||||| || ||||| ||||| ||||||||||||| ||||||||||||||||||||| ||||| ||||| || | |||||| |||||      |  || |||||          ||      ||  || |   |   | ||     |||   || |      || || |||    | || ||       |||  ||    | |    | ||||| || |    | | ||||  | ||  |  ||| |                           
GGAAGAGCAGAATATTTTGCGTCCTTCAAACAAAACGCTGATGGATTTATCTGTTCTACATTGCCTGGAATTTCTCACCCTCAAGTTCAATATTCCCCAGgtaaaaatactttttactaattattttgagaaaagtgattctggggtgattatggaattgtaacactgattataatttttgagacccgtccaaagccgtgaatctgcacaattattattgcagtaacgatactagtactactagtgtgttttttccttttctaactcaaacttgtcttttgttggctaatcgaaaag

upper sequence: AT1G70710.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA08G04840.1 (Glycine max), 5'ss of exon 5
GGAAAAGCAGAGTATTTTGAGTCTTTCAAGCAGAACGCAGATGGGTTTATCTGTTCTATATTGCCTGGAATTTCTCACCCCCAAGTCCAATACTCTCGAGgtaata-atacaaaaccccatcattttt---tttctcaatatcaaagtacttttcccacattcacgtgatttacttttgtcttt---ttccttctaaaaaattcaaacttttttctatgcttatctttaattaattagtagtaatctgatttctttttgtcttacatatcacag
|||| |||||| ||||||| ||| ||||| || ||||| ||||| ||||||||||||| ||||||||||||||||||||| ||||| ||||| || | |||||| | || |   | | ||   |||||   ||| |  |  |   | || ||     |  || |    | | | | |  | |||     || || |||                                                                            
GGAAGAGCAGACTATTTTGCGTCGTTCAAACAAAACGCTGATGGATTTATCTGTTCTACATTGCCTGGAATTTCTCACCCTCAAGTTCAATATTCCCCAGgtaaaatattccctagctcactgtttttcactttgttgactttttattaattagagtattttgagaaaaatgattatgatttttgagacccgtccaaagc--------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164024694|gb|ES169015.1|ES169015
EST:     TGGAATTTCTCACCCCCAAGTCCAATACTCTCGAG                         GAGGGCTTACTAGTGAAGACTGGAGGGTAGTAACATGCAACATGTAACATC
genomic: TGGAATTTCTCACCCCCAAGTCCAATACTCTCGAGgtaataatac ... catatcacagGAGGGCT-ACTAGTGAAGACTGGAGGG-AGTAACATGCAACATGTAACATC
EST: gi|86069494|gb|DR365251.1|DR365251
EST:     CTGTTCTATATTGCCTGGAATTTCTCACCCCCAAGTCCAATACTCTCGAG                         GAGGGCTACTAGTGAAGACTGGAGGNAGTAACATGCAACATGTAACATCAC
genomic: CTGTTCTATATTGCCTGGAATTTCTCACCCCCAAGTCCAATACTCTCGAGgtaataatac ... catatcacagGAGGGCTACTAGTGAAGACTGGAGGGAGTAACATGCAACATGTAACATCAC
EST: gi|164178260|gb|ES061638.1|ES061638
EST:     CCTGGAATTTCTCACCCCCCAAGTCCAATACTCTCGAG                         GAGGGCTACTAGTGAAGACTGGAGGGAGTAACATGCAACATGTAACATCAC
genomic: CCTGGAATTTCTCA-CCCCCAAGTCCAATACTCTCGAGgtaataatac ... catatcacagGAGGGCTACTAGTGAAGACTGGAGGGAGTAACATGCAACATGTAACATCAC
EST: gi|164197905|gb|EL982616.1|EL982616
EST:     CTGTTCTATATTGCCTGGAATTTCTCACCCCCAAGTCCAATACTCTCGAG                         GACGGGCTACTAGTGAAGACTGGAGGGAGTAACATGC
genomic: CTGTTCTATATTGCCTGGAATTTCTCACCCCCAAGTCCAATACTCTCGAGgtaataatac ... catatcacagGA-GGGCTACTAGTGAAGACTGGAGGGAGTAACATGC
EST: gi|164038597|gb|ES101658.1|ES101658
EST:     CTGTTCTATATTGCCTGGAATTTCTCACCCCCAAGTCCAATACTCTCGAG                         GAGGGCTACTA
genomic: CTGTTCTATATTGCCTGGAATTTCTCACCCCCAAGTCCAATACTCTCGAGgtaataatac ... catatcacagGAGGGCTACTA