Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   
3  
 5'  3'   
4  
 5'  3'   
5  
 5'  3'   
6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTCTCTTCTTCGAAGGTCAACGTTCCGGTAAACTCCCTCCAGATCAACGCTTAAAATGGCGCCGTGACTCAGCATTACGCGACGGTTCCTCCGCCGGCgtaagtctactctactaacatacatttcaaacttctccttcttctaatctctaacttttccgacgatatttcaaaaatctcag

Basic information

species Arabidopsis thaliana
transcript AT1G70710.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164190916|gb|ES069065.1|ES069065
EST:     CGCGACGGTTCCTCCGCCGGC                         GTTGACTTATCCGGTGGTTACTACGACGCCGGAGACAACATCAAGTTCGGT
genomic: CGCGACGGTTCCTCCGCCGGCgtaagtctac ... aaaatctcagGTTGACTTATCCGGTGGTTACTACGACGCCGGAGACAACATCAAGTTCGGT
EST: gi|164036584|gb|EL972018.1|EL972018
EST:     GCTTAAAATGGCGCCGTGACTCAGCATTACGCGACGGTTCCTCCGCCGGC                         GTTGACTTATCCGGTGGTTACTACGACGCCGGAGACAACATCAAGTTCGGT
genomic: GCTTAAAATGGCGCCGTGACTCAGCATTACGCGACGGTTCCTCCGCCGGCgtaagtctac ... aaaatctcagGTTGACTTATCCGGTGGTTACTACGACGCCGGAGACAACATCAAGTTCGGT
EST: gi|125200707|gb|EL215661.1|EL215661
EST:     GCTTAAAATGGCGCCGTGACTCAGCATTACGCGACGGTTCCTCCGCCGGC                         GTTGACTTATCCGGTGG
genomic: GCTTAAAATGGCGCCGTGACTCAGCATTACGCGACGGTTCCTCCGCCGGCgtaagtctac ... aaaatctcagGTTGACTTATCCGGTGG
EST: gi|86069496|gb|DR365253.1|DR365253
EST:     GCTTAAAATGGCGCCGTGACTCAGCATTACGCGACGGTTCCTCCGCCGGC                         GTTGACTTATCCGGTGGTTACTACGACGCCGGAGACAACATCAAGTTCGGT
genomic: GCTTAAAATGGCGCCGTGACTCAGCATTACGCGACGGTTCCTCCGCCGGCgtaagtctac ... aaaatctcagGTTGACTTATCCGGTGGTTACTACGACGCCGGAGACAACATCAAGTTCGGT
EST: gi|86069495|gb|DR365252.1|DR365252
EST:     GCTTAAAATGGCGCCGTGACTCAGCATTACGCGACGGTTCCTCCGCCGGC                         GTTGACTTATCCGGTGGTTACTACGACGCCGGAGACAACATCAAGTTCGGT
genomic: GCTTAAAATGGCGCCGTGACTCAGCATTACGCGACGGTTCCTCCGCCGGCgtaagtctac ... aaaatctcagGTTGACTTATCCGGTGGTTACTACGACGCCGGAGACAACATCAAGTTCGGT
EST: gi|164153874|gb|ES071274.1|ES071274
EST:     GCTTAAAATGGCGCCGTGACTCAGCATTACGCGACGGTTCCTCCGCCGGC                         GTTGACTTATCCGGTGGTTACTACGACGCCGGAGACAACA
genomic: GCTTAAAATGGCGCCGTGACTCAGCATTACGCGACGGTTCCTCCGCCGGCgtaagtctac ... aaaatctcagGTTGACTTATCCGGTGGTTACTACGACGCCGGAGACAACA
EST: gi|124831553|gb|EH915992.1|EH915992
EST:     CCTCCGCCGGC                         GTTGACTTATCCGGTGGTTACTACGACGCCGGAGACAACATCAAGTTCGGT
genomic: CCTCCGCCGGCgtaagtctac ... aaaatctcagGTTGACTTATCCGGTGGTTACTACGACGCCGGAGACAACATCAAGTTCGGT
EST: gi|86069497|gb|DR365254.1|DR365254
EST:     GCTTAAAATGGCGCCGTGACTCAGCATTACGCGACGGTTCCTCCGCCGGC                         GTTGACTTATCCGGTGGTTACTACGACGCCGGAGACAACATCAAGTTCGGT
genomic: GCTTAAAATGGCGCCGTGACTCAGCATTACGCGACGGTTCCTCCGCCGGCgtaagtctac ... aaaatctcagGTTGACTTATCCGGTGGTTACTACGACGCCGGAGACAACATCAAGTTCGGT
EST: gi|164066652|gb|ES203501.1|ES203501
EST:     CCTCCGCCGGC                         GTTGACTTATCCGGTGGTTACTACGACGCCGGAGACAACATCAAGTTCGGT
genomic: CCTCCGCCGGCgtaagtctac ... aaaatctcagGTTGACTTATCCGGTGGTTACTACGACGCCGGAGACAACATCAAGTTCGGT