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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagagattaaaaaaaaaaaaaacattggtcccaaatttcagaccaaaaacaaaatacatagccgttttgctctttgggaccaaagccttattgtttttgtgatatgtgaacagGTGGATTACATTCTCGGAGACAACCCGATGGGACTGTCTTACATGGTTGGATACGGTCAAAAGTTTCCACGTAGGATTCATCACCGTGGTAGCTCGGTTC

Basic information

species Arabidopsis thaliana
transcript AT1G70710.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G70710.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA05G34850.1 (Glycine max), 3'ss of exon 6
gtaagagattaaaaaaaaaaaaaacattggtcccaaatttcagaccaaaaacaaa-atacatagccgttttgctctttgggaccaaagccttattgtttttgtgatatgtg----------aacagGTGGATTACATTCTCGGAGACAACCCGATGGGACTGTCTTACATGGTTGGATACGGTCAAAAGTTTCCACGTAGGATTCATCACCGTGGTAGCTCGGTTC
                |  || | ||||  | ||| || | | |  |  |||    | |  | | | |||     |||  ||  ||     ||   |    |  | | |||          |  |||||||||||||||| || ||||||||  ||||| |||| |||||||||||||| |||  |   |  || |  ||||| || ||||| |  || ||| |||
--------------gtatgaatatcattt-ttccacatctgacaaaattaacggctagattttgtcctttctgattttctgagtaagcaaataaattcacggcaacacgtggcttccatttactagGTGGATTACATTCTTGGGGACAACCCATTGGGAATGTCGTACATGGTTGGATATGGTGCACGCTACCCGCAGAGGATACACCACCGGGCCAGTTCGCTTC

upper sequence: AT1G70710.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA08G04840.1 (Glycine max), 3'ss of exon 6
gtaagagattaaaaaaaaaaaaaacattggtcccaaatttcagaccaaaaacaaaatacat-agccgttttgctctttgggaccaaagccttattgtttttgtgatatgtgaacagGTGGATTACATTCTCGGAGACAACCCGATGGGACTGTCTTACATGGTTGGATACGGTCAAAAGTTTCCACGTAGGATTCATCACCGTGGTAGCTCGGTTC
          ||    |  |  |  |||| |   |   |  |    | ||      ||||  ||  ||  || ||          |   |   | | ||||     || | |  |||||||||||||||| || ||||| ||  ||||| |||| |||||||||||||| |||  |   |  || |  || || || ||||| |  |||||| |||
----------aatcgtactactattattgttattatgatg-attttataattttgctacaagagtagtaatgttcaaataatgtgagtgcacgtggctttt----cattt-actagGTGGATTACATTCTTGGGGACAATCCATTGGGAATGTCGTACATGGTTGGATATGGTGCACGCTACCCGCAGAGAATACACCACCGGGCCAGCTCGCTTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164064673|gb|ES095799.1|ES095799
EST:     CCCCATCTCTCCTCCGTCAAATCGCCAAGCGTCAG                         GTGGATTACATTCTCGGAGACAACCCGATGGGACTGTCTTACATGGTTGGA
genomic: CCCCATCTCTCCTCCGTCAAATCGCCAAGCGTCAGgtaagagatt ... atgtgaacagGTGGATTACATTCTCGGAGACAACCCGATGGGACTGTCTTACATGGTTGGA
EST: gi|164154063|gb|EL993865.1|EL993865
EST:     CTGCTTCCCCATCTCTCCTCCGTCAAATCGCCAAGCGTCAG                         GTGGATTACATTCTCGGAGACAACCCGATGGGACTGTCTTACATGGTTGGA
genomic: CTGCTTCCCCATCTCTCCTCCGTCAAATCGCCAAGCGTCAGgtaagagatt ... atgtgaacagGTGGATTACATTCTCGGAGACAACCCGATGGGACTGTCTTACATGGTTGGA
EST: gi|163987495|gb|ES061909.1|ES061909
EST:     GAATTAACTGCTTCCCCATCTCTCCTCCGTCAAATCGCCAAGCGTCAG                         GTGGATTACATTCTCGGAGACAACCCGATGGGAACTGTCTTACATGGTTGG
genomic: GAATTAACTGCTTCCCCATCTCTCCTCCGTCAAATCGCCAAGCGTCAGgtaagagatt ... atgtgaacagGTGGATTACATTCTCGGAGACAACCCGATGGGA-CTGTCTTACATGGTTGG
EST: gi|164153404|gb|ES117061.1|ES117061
EST:     CGAATTAACTGCTTCCCCATCTCTCCTCCGTCAAATCGCCAAGCGTCAG                         GTGGATTACATTCTCGGAGACAACCCGATGGGAACTGTCTTACATGGTTGG
genomic: CGAATTAACTGCTTCCCCATCTCTCCTCCGTCAAATCGCCAAGCGTCAGgtaagagatt ... atgtgaacagGTGGATTACATTCTCGGAGACAACCCGATGGGA-CTGTCTTACATGGTTGG
EST: gi|164090008|gb|ES054334.1|ES054334
EST:     GCGAATTAACTGCTTCCCCATCTCTCCTCCGTCAAATCGCCAAGCGTCAG                         GTGGATTACATTCTCGGAGACAACCCGATGGGAC
genomic: GCGAATTAACTGCTTCCCCATCTCTCCTCCGTCAAATCGCCAAGCGTCAGgtaagagatt ... atgtgaacagGTGGATTACATTCTCGGAGACAACCCGATGGGAC
EST: gi|164226697|gb|EL983487.1|EL983487
EST:     TCCCCATCTCTCCTCCGTCAAATCGCCAAGCGTCAG                         GTGGATTACATTCTCGGAGACAACCCGATGGGACTGTCTTACATGGTTGGA
genomic: TCCCCATCTCTCCTCCGTCAAATCGCCAAGCGTCAGgtaagagatt ... atgtgaacagGTGGATTACATTCTCGGAGACAACCCGATGGGACTGTCTTACATGGTTGGA
EST: gi|163984174|gb|ES074696.1|ES074696
EST:     GCGAATTAACTGCTTCCCCATCTCTCCTCCGTCAAATCGCCAAGCGTCAG                         GTGGATTACATTCTCGGAGACAACCCGATGGGACTGTC
genomic: GCGAATTAACTGCTTCCCCATCTCTCCTCCGTCAAATCGCCAAGCGTCAGgtaagagatt ... atgtgaacagGTGGATTACATTCTCGGAGACAACCCGATGGGACTGTC
EST: gi|164075871|gb|EL991535.1|EL991535
EST:     CAAATCGCCAAGCGTCAG                         GTGGATTACATTCTCGGAGACAACCCGATGGGACTGTCTTACATGGTTGGA
genomic: CAAATCGCCAAGCGTCAGgtaagagatt ... atgtgaacagGTGGATTACATTCTCGGAGACAACCCGATGGGACTGTCTTACATGGTTGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagccgttttgctctttgggaccaaagccttattgtttttgtgatatgtgaacagGTGGATTACATTCTCGGAGACAACCCGATGGGACTGTCTTACATGGTTGGATACGGTCAAAAGTTTCCACGTAGGATTCATCACCGTGGTAGCTCGGTTC
                             ttattgttttt  TA-rich tract