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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCGCCCGTGCGGGCCTGCCCCAGTCAGCTGGCGTCCGCCTTCGCCGCCTTTGCCAAGTACGAGCACGAGCGCGGCGACCTGTTCGTGGCGCTGGCCAGgtgcgaggagctgccacgtgtggatgcgggtttgggttcgggcttgcaacaccgttgccacgatgtttggccgggacagagccgggacctggctggaagt...

Basic information

species Chlamydomonas reinhardtii
transcript EDO98373
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10776597|gb|AV633277.1|AV633277
EST:     TTTGCCAAGTACGAGCACGAGCGCGGCGACCTGTTCGTGGCGCTGGCCAG                         GGGCTTCAGCGAGCTGTCTCTGGCCAAGCTGGGCGCCGAGGAGCGCAAGGG
genomic: TTTGCCAAGTACGAGCACGAGCGCGGCGACCTGTTCGTGGCGCTGGCCAGgtgcgaggag ... cacctcgcagGGGCTTCAGCGAGCTGTCTCTGGCCAAGCTGGGCGCCGAGGAGCGCAAGGG
EST: gi|22058246|gb|BQ812911.1|BQ812911
EST:     TTTGCCAAGTACGAGCACGAGCGCGGCGACCTGTTCGTGGCGCTGGCCAG                         GGGCTTCAGCGAGCTGTCTCTGGCCAAGCTGGGCGCCGAGGAGCGCAAGGG
genomic: TTTGCCAAGTACGAGCACGAGCGCGGCGACCTGTTCGTGGCGCTGGCCAGgtgcgaggag ... cacctcgcagGGGCTTCAGCGAGCTGTCTCTGGCCAAGCTGGGCGCCGAGGAGCGCAAGGG
EST: gi|161820970|gb|FC110474.1|FC110474
EST:     TTCGCCAAGTACGAGCACGAGCGCGGCGACCTGTTCGTGGCGCTGGCCAG                         GGGCTTTAGCGAGCTGTCTCTGGGCAAGCTGGGCGCCGAGGAGCGCAAGGA
genomic: TTTGCCAAGTACGAGCACGAGCGCGGCGACCTGTTCGTGGCGCTGGCCAGgtgcgaggag ... cacctcgcagGGGCTTCAGCGAGCTGTCTCTGGCCAAGCTGGGCGCCGAGGAGCGCAAGGG
EST: gi|15701457|gb|BI725762.1|BI725762
EST:     TTTGCCAAGTACGAGCACGAGCGCGGCGACCTGTTCGTGGCGCTGGCCAG                         GGGCTTCAGCGAGCTGTCTCTGGCCAAGCTGGGCGCCGAGGAGCGCAAGGG
genomic: TTTGCCAAGTACGAGCACGAGCGCGGCGACCTGTTCGTGGCGCTGGCCAGgtgcgaggag ... cacctcgcagGGGCTTCAGCGAGCTGTCTCTGGCCAAGCTGGGCGCCGAGGAGCGCAAGGG
EST: gi|9027949|gb|BE237989.1|BE237989
EST:     TTTGCCAAGTACGAGCACGAGCGCGGCGACCTGTTCGTGGCGCTGGCCAG                         GGGCTTCAGCGAGCTGTCTCTGGCCAAGCTGGGCGCCGAGGAGCGCAAGGG
genomic: TTTGCCAAGTACGAGCACGAGCGCGGCGACCTGTTCGTGGCGCTGGCCAGgtgcgaggag ... cacctcgcagGGGCTTCAGCGAGCTGTCTCTGGCCAAGCTGGGCGCCGAGGAGCGCAAGGG
EST: gi|161798100|gb|FC082636.1|FC082636
EST:     TTCGCCAAGTACGAGCACGAGCGCGGCGACCTGTTCGTGGCGCTGGCCAG                         GGGCTTTAGCGAGCTGTCTCTGGGCAAGCTGGGCGCCGAGGAGCGCAAGGA
genomic: TTTGCCAAGTACGAGCACGAGCGCGGCGACCTGTTCGTGGCGCTGGCCAGgtgcgaggag ... cacctcgcagGGGCTTCAGCGAGCTGTCTCTGGCCAAGCTGGGCGCCGAGGAGCGCAAGGG
EST: gi|22058245|gb|BQ812910.1|BQ812910
EST:     TTTGCCAAGTACGAGCACGAGCGCGGCGACCTGTTCGTGGCGCTGGCCAG                         GGGCTTCAGCGAGCTGTCTCTGGCCAAGCTGGGCGCCGAGGAGCGCAAGGG
genomic: TTTGCCAAGTACGAGCACGAGCGCGGCGACCTGTTCGTGGCGCTGGCCAGgtgcgaggag ... cacctcgcagGGGCTTCAGCGAGCTGTCTCTGGCCAAGCTGGGCGCCGAGGAGCGCAAGGG
EST: gi|161798222|gb|FC083457.1|FC083457
EST:     TTCGCCAAGTACGAGCACGAGCGCGGCGACCTGTTCGTGGCGCTGGCCAG                         GGGCTTTAGCGAGCTGTCTCTGGGCAAGCTGGGCGCCGAGGAGCGCAAGGA
genomic: TTTGCCAAGTACGAGCACGAGCGCGGCGACCTGTTCGTGGCGCTGGCCAGgtgcgaggag ... cacctcgcagGGGCTTCAGCGAGCTGTCTCTGGCCAAGCTGGGCGCCGAGGAGCGCAAGGG
EST: gi|161800865|gb|FC084111.1|FC084111
EST:     TTCGCCAAGTACGAGCACGAGCGCGGCGACCTGTTCGTGGCGCTGGCCAG                         GGGCTTTAGCGAGCTGTCTCTGGGCAAGCTGG
genomic: TTTGCCAAGTACGAGCACGAGCGCGGCGACCTGTTCGTGGCGCTGGCCAGgtgcgaggag ... cacctcgcagGGGCTTCAGCGAGCTGTCTCTGGCCAAGCTGG
EST: gi|161812274|gb|FC096698.1|FC096698
EST:     TTCGCCAAGTACGAGCACGAGCGCGGCGACCTGTTCGTGGCGCTGGCCAG                         GGGCTTTAGCGAGCTGTCTCTGGGCAAGCTGGGCGCCG
genomic: TTTGCCAAGTACGAGCACGAGCGCGGCGACCTGTTCGTGGCGCTGGCCAGgtgcgaggag ... cacctcgcagGGGCTTCAGCGAGCTGTCTCTGGCCAAGCTGGGCGCCG
EST: gi|10773499|gb|AV624322.1|AV624322
EST:     TTTGCCAAGTACGAGCACGAGCGCGGCGACCTGTTCGTGGCGCTGGCCAG                         GGGCTTCAGCGAGCTGTCTCTGGCCAAGCTGGGCGCCGAGGAGCGCAAGGG
genomic: TTTGCCAAGTACGAGCACGAGCGCGGCGACCTGTTCGTGGCGCTGGCCAGgtgcgaggag ... cacctcgcagGGGCTTCAGCGAGCTGTCTCTGGCCAAGCTGGGCGCCGAGGAGCGCAAGGG
EST: gi|14235308|gb|BG854124.1|BG854124
EST:     TTTGCCAAGTACGAGCACGAGCGCGGCGACCTGTTCGTGGCGCTGGCCAG                         GGGCTTCA-CGGAGCTGTC
genomic: TTTGCCAAGTACGAGCACGAGCGCGGCGACCTGTTCGTGGCGCTGGCCAGgtgcgaggag ... cacctcgcagGGGCTTCAGCG-AGCTGTC
EST: gi|161794466|gb|FC080782.1|FC080782
EST:     TTCGCCAAGTACGAGCACGAGCGCGGCGACCTGTTCGTGGCGCTGGCCAG                         GGGCTTTAGCGAGCTGTCTCTGGGCAAGCTGGGCGCCGAGGAGCGCAAGGA
genomic: TTTGCCAAGTACGAGCACGAGCGCGGCGACCTGTTCGTGGCGCTGGCCAGgtgcgaggag ... cacctcgcagGGGCTTCAGCGAGCTGTCTCTGGCCAAGCTGGGCGCCGAGGAGCGCAAGGG
EST: gi|161802251|gb|FC091568.1|FC091568
EST:     TTCGCCAAGTACGAGCACGAGCGCGGCGACCTGTTCGTGGCGCTGGCCAG                         GGGCTTTAGCGAGCTGTCTCTGGGCAAGCTGGGCGCCGAGGAGCGCAAGGA
genomic: TTTGCCAAGTACGAGCACGAGCGCGGCGACCTGTTCGTGGCGCTGGCCAGgtgcgaggag ... cacctcgcagGGGCTTCAGCGAGCTGTCTCTGGCCAAGCTGGGCGCCGAGGAGCGCAAGGG
EST: gi|161819437|gb|FC109409.1|FC109409
EST:     TTCGCCAAGTACGAGCACGAGCGCGGCGACCTGTTCGTGGCGCTGGCCAG                         GGGCTTTAGCGAGCTGTCTCTGGGCAAGCTGGGCGCCGAGGAGCGCAAGGA
genomic: TTTGCCAAGTACGAGCACGAGCGCGGCGACCTGTTCGTGGCGCTGGCCAGgtgcgaggag ... cacctcgcagGGGCTTCAGCGAGCTGTCTCTGGCCAAGCTGGGCGCCGAGGAGCGCAAGGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGCGCCCGTGCGGGCCTGCCCCAGTCAGCTGGCGTCCGCCTTCGCCGCCTTTGCCAAGTACGAGCACGAGCGCGGCGACCTGTTCGTGGCGCTGGCCAGgtgcgaggagctgccacgtgtggatgcgggtttgggttcgggcttgcaacaccgttgccacgatgtttggccgggacagagccgggacctggctggaagt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtggat
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caacacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggctgg