1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
CGGCACACCAATCAGCAGCTCACTGCCTCCTCCCTTCCCACCTTGCAACTTGAGAACAGCGCTTACACGATATGCATGTCTTTTGAGTTCTCCAAAGAAGgttggttggattcatttaccattagactggttataatcagttttgtttctcttcatagagattcaaactcaattattttcatgtttattttcttgcag
species | Arabidopsis thaliana |
transcript | AT4G30210.2 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: ACGATATGCATGTCTTTTGAGTTCTCCAAAGAAG TCTGCTTTAGTTGCGTTGGCTGCTCATGCNTCTGATCCTACCGAAGCAGAAEST: gi|86044360|gb|DR340115.1|DR340115
genomic: ACGATATGCATGTCTTTTGAGTTCTCCAAAGAAGgttggttgga ... tttcttgcagTCTGCTTTAGTTGCGTTGGCTGCTCATGCATCTGATCCTACCGAAGCAGAA
EST: TGAGAACAGCGCTTACACGATATGCATGTCTTTTGAGTTCTCCAAAGAAG TCTGCTTTAGTTGCGTTGGCTGCTCATGCATCTGATCCTACCGAAGCAGAAEST: gi|86044357|gb|DR340112.1|DR340112
genomic: TGAGAACAGCGCTTACACGATATGCATGTCTTTTGAGTTCTCCAAAGAAGgttggttgga ... tttcttgcagTCTGCTTTAGTTGCGTTGGCTGCTCATGCATCTGATCCTACCGAAGCAGAA
EST: TCTTTTGAGTTCTCCAAAGAAG TCTGCTTTAGTTGCGTTGGCTGCTCATGCATCTGATCCTACCGAAGCAGAAEST: gi|164019604|gb|ES114998.1|ES114998
genomic: TCTTTTGAGTTCTCCAAAGAAGgttggttgga ... tttcttgcagTCTGCTTTAGTTGCGTTGGCTGCTCATGCATCTGATCCTACCGAAGCAGAA
EST: TGAGAACAGCGCTTACACGATATGCATGTCTTTTGAGTTCTCCAAAGAAG TCTGCTTTAGTEST: gi|86044356|gb|DR340111.1|DR340111
genomic: TGAGAACAGCGCTTACACGATATGCATGTCTTTTGAGTTCTCCAAAGAAGgttggttgga ... tttcttgcagTCTGCTTTAGT
EST: TGAGAACAGCGCTTACACGATATGCATGTCTTTTGAGTTCTCCAAAGAAG TCTGCTTTAGTTGCGTTGGCTGCTCATGCATCTGATCCTACCGAAGCAGAAEST: gi|86044358|gb|DR340113.1|DR340113
genomic: TGAGAACAGCGCTTACACGATATGCATGTCTTTTGAGTTCTCCAAAGAAGgttggttgga ... tttcttgcagTCTGCTTTAGTTGCGTTGGCTGCTCATGCATCTGATCCTACCGAAGCAGAA
EST: TGAGAACAGCGCTTACACGATATGCATGTCTTTTGAGTTCTCCAAAGAAG TCTGCTTTAGTTGCGTTGGCTGCTCATGCATCTGATCCTACCGAAGCAGAAEST: gi|116436419|gb|EG479011.1|EG479011
genomic: TGAGAACAGCGCTTACACGATATGCATGTCTTTTGAGTTCTCCAAAGAAGgttggttgga ... tttcttgcagTCTGCTTTAGTTGCGTTGGCTGCTCATGCATCTGATCCTACCGAAGCAGAA
EST: TGAGAACAGCGCTTACACGATATGCATGTCTTTTGAGTTCTCCAAAGAAG TCTGCTTTAGTTGCGTTGGCTGCTCATGCATCTGATCCTACCGAAGCAGAAEST: gi|86044359|gb|DR340114.1|DR340114
genomic: TGAGAACAGCGCTTACACGATATGCATGTCTTTTGAGTTCTCCAAAGAAGgttggttgga ... tttcttgcagTCTGCTTTAGTTGCGTTGGCTGCTCATGCATCTGATCCTACCGAAGCAGAA
EST: TGAGAACAGCGCTTACACGATATGCATGTCTTTTGAGTTCTCCAAAGAAG TCTGCTTTAGTTGCGTTGGCTGCTCATGCATCTGATCC
genomic: TGAGAACAGCGCTTACACGATATGCATGTCTTTTGAGTTCTCCAAAGAAGgttggttgga ... tttcttgcagTCTGCTTTAGTTGCGTTGGCTGCTCATGCATCTGATCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGCACACCAATCAGCAGCTCACTGCCTCCTCCCTTCCCACCTTGCAACTTGAGAACAGCGCTTACACGATATGCATGTCTTTTGAGTTCTCCAAAGAAGgttggttggattcatttaccattagactggttataatcagttttgtttctcttcatagagattcaaactcaattattttcatgtttattttcttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG