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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctctctctctctctctctgactcctctgcatgtttgtgtgaatattaaatcaatttgtttatgctcagtggagtttggccttattagattagtctaacaattcagtttttggattccagCTTTGAGGCTTCGCAGAGATGGACAAAGTTTAGATGCACAAGGAAATCATGTTGGTCCTGAACTTCATTCCTCAACTCTGAACCCACACTTGATCCAATG

Basic information

species Glycine max
transcript GLYMA20G32230.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254332474|gb|GR843951.1|GR843951
EST:     TCTTGTAAACTCAAAATTGAATTCTGTTTACAATAATAATCTTGAGACAG                         CTTTGAGGCTTCGCAGAGATGGACAAAGTTTAGATGCACAAGGAAATCATG
genomic: TCTTGTAAACTCAAAATTGAATTCTGTTTACAATAATAATCTTGAGACAGgtctctctct ... tggattccagCTTTGAGGCTTCGCAGAGATGGACAAAGTTTAGATGCACAAGGAAATCATG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcagtggagtttggccttattagattagtctaacaattcagtttttggattccagCTTTGAGGCTTCGCAGAGATGGACAAAGTTTAGATGCACAAGGAAATCATGTTGGTCCTGAACTTCATTCCTCAACTCTGAACCCACACTTGATCCAATG
                           gtctaac  putative branch site (score: 2)
                                         ttttt  putative PPT
                ttattagatta  TA-rich tract