Sequence
atgc intronic sequence ATGC exonic sequencegttagttctcacctctactaatcttttgctttaaattttggctagcctttgttttcttttaaagaagatcattttcttatcttagATCATTGCAAGGCAATCAACTCTCTGGGAAGATTCCATCAGTGATTGGTCTCATGCAAGCCCTTGCAGTCTT
Basic information
species | Arabidopsis thaliana |
transcript | AT2G26330.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G26330.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GLYMA06G05900.3 (Glycine max), 3'ss of exon 10
----gttagttctcacctctactaatcttttgctttaaattttggc---tagcctttgttttctttta---aagaagatcatttt---cttatct--------tagATCATTGCAAGGCAATCAACTCTCTGGGAAGATTCCATCAGTGATTGGTCTCATGCAAGCCCTTGCAGTCTT
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gtatgtactgcattatcctttttcagttatttttaaaaacaatggcatgtggtcttccattttccttatttatgaagctccttttaaacttgtttgagcttggtagGTCATTGCAAGGCAATAAACTCTCAGGGCATATTCCATCAGTGATTGGTCTGATGCAAGCGCTTACTGTCTT
upper sequence: AT2G26330.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GLYMA14G11220.2 (Glycine max), 3'ss of exon 10
-----------------------gttagttctcacctctactaatcttttgctttaaattttggctagcctttgttttcttttaaagaagatcattttcttatcttagATCATTGCAAGGCAATCAACTCTCTGGGAAGATTCCATCAGTGATTGGTCTCATGCAAGCCCTTGCAGTCTT
|||| || | | | || ||| | || | ||| || | ||| | || || | ||| | || | | || || |||||||||||| |||||||||| | |||||||||||||| |||||||||||||| ||||| ||| |
gtatgtgttgcatgatccttcaagttattttta--tgagaatgatatttggtctttcactttc-cttgtcttggaatttcttgatagat--ttgcttgagtttggcagGTCGTTGCAAGGCAATAAACTCTCTGGACATATTCCATCAGTGATCGGTCTCATGCAAGCACTTGCTGTCCT
upper sequence: AT2G26330.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GLYMA17G34380.1 (Glycine max), 3'ss of exon 11
--------------------gttagttctcacctct---actaatcttttgctttaaattttggctagcctttgttttcttttaaagaagatcattttcttatcttagATCATTGCAAGGCAATCAACTCTCTGGGAAGATTCCATCAGTGATTGGTCTCATGCAAGCCCTTGCAGTCTT
| |||| | | | | | || ||| | || | ||| | | | |||||| | | | || | | || || |||||||||||| |||||||||| | |||||| | ||||| |||||||||||||| ||||| ||| |
gtatgtgtgcatgatcttttttaagtttttttttatgagaatgatatttggtctttcactttttttgtcttggaatttctt---gatagatttgcttgagtttggcagGTCCTTGCAAGGCAATAAACTCTCTGGACATATTCCACCGGTGATCGGTCTCATGCAAGCACTTGCTGTCCT
upper sequence: AT2G26330.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: Vv04s0008g01970.t01 (Vitis vinifera), 3'ss of exon 10
------------------gttagttctcacctctactaatcttttgctttaaattttggctagcctttgttttctt--ttaaagaagatcattttcttatct--tagATCATTGCAAGGCAATCAACTCTCTGGGAAGATTCCATCAGTGATTGGTCTCATGCAAGCCCTTGCAGTCTT
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gtatgtgcattgaacttccttgaatatcttaaaaagtgttgtactatttcagtgcttggaggaactttctcttattaattgctcgaacccaaatttttatctcctagATCCTTGCAAGGTAACCAGCTTTCAGGGCAAATCCCATCAGTGATTGGTCTCATGCAGGCTCTTGCTGTCTTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164102423|gb|ES211404.1|ES211404EST: GCAAGTTGCAACATT ATCATTGCAAGGCAATCAACTCTCTGGGAAGATTCCATCAGTGATTGGTCT
genomic: GCAAGTTGCAACATTgttagttctc ... cttatcttagATCATTGCAAGGCAATCAACTCTCTGGGAAGATTCCATCAGTGATTGGTCT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttaaattttggctagcctttgttttcttttaaagaagatcattttcttatcttagATCATTGCAAGGCAATCAACTCTCTGGGAAGATTCCATCAGTGATTGGTCTCATGCAAGCCCTTGCAGTCTT
tcattttcttatctt CT-rich tract
tttgttttcttttaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttagttctcacctctactaatcttttgctttaaattttggctagcctttgttttcttttaaagaagatcattttcttatcttagATCATTGCAAGGCAATCAACTCTCTGGGAAGATTCCATCAGTGATTGGTCTCATGCAAGCCCTTGCAGTCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA