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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTCGGCATCTTGAAGTTCAGTTGCTTTGTGATCAATATGGTAATGTAGCAGCACTTCACAGTCGTGATTGCAGTGTGCAACGGCGACACCAGAAGgtctgcccctcacccacccagccataaacacgaagtttatagaaccatgtattttgttatgcaatatatttctcaattgtagctccattcacattttgctacaacag

Basic information

species Zea mays
transcript GRMZM5G858094_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G858094_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os05g22940.1 (Oryza sativa), 5'ss of exon 9
AGTCGGCATCTTGAAGTTCAGTTGCTTTGTGATCAATATGGTAATGTAGCAGCACTTCACAGTCGTGATTGCAGTGTGCAACGGCGACACCAGAAGgtctgcccctcacccacccagccataaacacgaagtttatagaaccatgtattttgttatgcaatatatttctcaattgtagctccattcacattttgctacaacag
||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||          | |||  | || |||          |||  || || ||  ||      |   ||  |||   | |       |   ||| | ||  |||||
AGTCGACATCTTGAAGTTCAGTTGCTTTGTGATCAATATGGCAACGTAGCAGCACTTCACAGTCGAGATTGCAGTGTACAACGGCGACACCAAAAGgtctgctgt-------ctcagtta-aatcac----ccctctgaatgatctacttc-ttgcctgctgcgttggtcagagg-aataatggttgtattctactg-aacag

upper sequence: GRMZM5G858094_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA04G11550.1 (Glycine max), 5'ss of exon 5
AGTCGGCATCTTGAAGTTCAGTTGCTTTGTGATCAATATGGTAATGTAGCAGCACTTCACAGTCGTGATTGCAGTGTGCAACGGCGACACCAGAAGgtctgcccctcacccacccagccataaacacgaagt-ttatagaaccatgtattttgttatgcaatatatttctcaattgtagctccattcacattttgctacaacag
|| || ||||| ||||| ||||| ||||||||||| || |||||||| |||||  | || || |||||||||||| | ||| || | ||||| |||||         |  ||    |     |   | || |   || |    |||  | |  | |        ||   |   ||||| |                        
AGCCGACATCTAGAAGTCCAGTTACTTTGTGATCAGTACGGTAATGTCGCAGCTTTGCATAGCCGTGATTGCAGTATTCAAAGGAGGCACCAAAAGgtacaa-----aaacattttgttgccactccaaattgccatggtgaaatgagtctcataaatggcctaatcaattgtttgtaacag----------------------

upper sequence: GRMZM5G858094_T01 (Zea mays), 5'ss of exon 7
lower sequence: Vv18s0001g04980.t01 (Vitis vinifera), 5'ss of exon 6
AGTCGGCATCTTGAAGTTCAGTTGCTTTGTGATCAATATGGTAATGTAGCAGCACTTCACAGTCGTGATTGCAGTGTGCAACGGCGACACCAGAAGgtctgcccctcaccca---------cccagccataaac-----acgaagtttatagaaccatgtattttgttatgcaatatatttctcaa-----ttgtagctccattcacattttgctacaacag------------------------------------------------------------------
||||| ||| | ||||||||||| || ||||||||  |||| ||||| ||||| || || || |||||||||||||| ||| |||| || || |||||  |  | ||    |         |  |    ||  |     | | |  | || ||       |||||  | || | || |||||  ||     || | ||    ||    ||||  |                                                                         
AGTCGCCATTTAGAAGTTCAGTTACTATGTGATCAGCATGGCAATGTTGCAGCCCTGCATAGCCGTGATTGCAGTGTTCAAAGGCGTCATCAAAAGgtaagttcatcctttagtagcttatcttaattttaggcctcttatgtaaataattgattttctcattttcatttgta-tacatttcagaaatcctttctggccttcttttttttttttttttttttttttaaaaagtttatcagtgccttttaaaaatagtatcactgaaagatctgatatatgttaaacag

upper sequence: GRMZM5G858094_T01 (Zea mays), 5'ss of exon 7
lower sequence: PP1S158_40V6.1 (Physcomitrella patens), 5'ss of exon 3
----AGTCGGCATCTTGAAGTTCAGTTGCTTTGTGATCAATATGGTAATGTAGCAGCACTTCACAGTCGTGATTGCAGTGTGCAACGGCGACACCAGAAGgtctgcccctcacccacccagccataaacacgaagtttatagaacca--tgtattttgttatgcaatatatttctcaattgtagctccattcacattttgctacaacag-----------------------------------------------------
    ||||| ||||| || |||||| |||| |||||| | ||||| ||||||||||| || ||||| |||||||| ||||||||| | || || || |||||  | | |         |   || |    |     | || |   ||     |   | || |    | | | | |    | |   |  ||  || |||    |||  |                                                      
ACAGAGTCGACATCTCGAGGTTCAGCTGCTCTGTGATAAGTATGGAAATGTAGCAGCTCTGCACAGCCGTGATTGTAGTGTGCAAAGACGGCATCAAAAGgtgagtctcaactggtagccttcacactttcctttctcattgtgtcaatcagagcctcttgtttcttttttcttttttcttttattttatcgacttttaaacacagtaatctgttgttttgttcatgcaacttatatttgggattgataaaacttgctatag