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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCATAATGATGATGAGGTTAGAGCGCTGTTTAAGCAAGTACAAGGTGAAGTCCCTGGCTCCCCAATATTTGTCATGAGGCTTGCATCCCAGgttagtttttttttttcctttctgaaatttatattccataccttttcacctttagttacccttgtattttctggaagcttcatctgatgcattattgaca...

Basic information

species Zea mays
transcript GRMZM5G858094_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G858094_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os05g22940.1 (Oryza sativa), 5'ss of exon 8
GTTCATAATGATGATGAGGTTAGAGCGCTGTTTAAGCAAGTACAAGGTGAAGTCCCTGGCTCCCCAATATTTGTCATGAGGCTTGCATCCCAGgttagtttttttttttcctttctgaaatttatattccataccttttcaccttt-agttacccttgt-attttctggaagcttcatctgatgcattattgaca
|||||||||||||||||||||||  |  | ||||||||||| ||||| ||||| ||||| |||||||||||| |||||||||| ||  | |||||  |   |||| |     ||   |  |||    |  ||      | |      |||||   | || || ||||| | | || ||||| |  |||||||| |
GTTCATAATGATGATGAGGTTAGGACATTATTTAAGCAAGTTCAAGGCGAAGTACCTGGTTCCCCAATATTTATCATGAGGCTAGCTGCTCAGgtggggccttttatggaagttac-accttttcccttaatgttgagttattccggagttattatggttatgttctgtatgtttgatctg-taaattattgaaa

upper sequence: GRMZM5G858094_T01 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA06G11120.1 (Glycine max), 5'ss of exon 4
GTTCATAATGATGATGAGGTTAGAGCGCTGTTTAAGCAAGTACAAGGTGAAGTCCCTGGCTCCCCAATATTTGTCATGAGGCTTGCATCCCAGgttagtttttttttttcctttctgaaatttatattccataccttttcacctttagttacccttgtattttctggaagcttcatctgatgcattattgaca
|||||||||||||||||||| || ||  |||| |||||||| ||||||||||| || || || || |||||| | |||| | |||||||||||||||| |  |    |     |||   || |  ||     | | |    | |  ||| |   | ||||| |   ||   |  || |  |   | | |    
GTTCATAATGATGATGAGGTAAGGGCATTGTTCAAGCAAGTTCAAGGTGAAGTTCCGGGTTCACCCATATTTATAATGAAGGTTGCATCCCAGgttagataatccact---gatctatgatctgaatg----aacatgattcttggagtcatggtcgtattct---gattatctattttgtttctaagtag--

upper sequence: GRMZM5G858094_T01 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA04G11550.1 (Glycine max), 5'ss of exon 4
GTTCATAATGATGATGAGGTTAGAGCGCTGTTTAAGCAAGTACAAGGTGAAGTCCCTGGCTCCCCAATATTTGTCATGAGGCTTGCATCCCAGgttagtttttttttttcctttctgaaatttatattccataccttttcacctttagttacccttgtattttctggaagcttcatctgatgcattattgaca
|||||||||||||||||||| || ||  |||| |||||||| ||||||||||| || || || || |||||| | |||| | |||||||||||||||| |  |    |    ||     || |  ||     | |||    | |  ||| |   | ||||  ||||      || | || | |    | |   
GTTCATAATGATGATGAGGTAAGGGCATTGTTCAAGCAAGTTCAAGGTGAAGTTCCAGGTTCTCCCATATTTATAATGAAGGTTGCATCCCAGgttagataatccactgatcttt---gatctgaatg----aacttgattcttggagtcatggtcgtat--tctgattatctcttttgtttctaagtag---

upper sequence: GRMZM5G858094_T01 (Zea mays), 5'ss of exon 6
lower sequence: AT1G36160.2 (Arabidopsis thaliana), 5'ss of exon 5
GTTCATAATGATGATGAGGTTAGAGCGCTGTTTAAGCAAGTACAAGGTGAAGTCCCTGGCTCCCCAATATTTGTCATGAGGCTTGCATCCCAGgt-tagtttttt-----tttttcctttctgaaatttatat---tccataccttttcacctt----------------tagttacccttgtattttctggaagcttcat-----ctgatgcattattgaca---
||||||||||||||||||||||| || || || |||||||| || ||||| ||||| ||||| ||||||||  | |||| | |||| || ||||| | | |  ||     | | || |    |||  |||  |   | | || ||  | || ||                |||| |  | |   ||||||  |   |||||     || ||   || ||   |   
GTTCATAATGATGATGAGGTTAGGGCTCTATTCAAGCAAGTTCAGGGTGAGGTCCCAGGCTCACCAATATTCATAATGAAGGTTGCGTCACAGgtatggctgcttaactatatctcttgatcgaagcttagctgagttcttatctggttactttactagagaatttaaagtagtaatgcattgcttttctttacatttcattttttctaattttttttttgtatag

upper sequence: GRMZM5G858094_T01 (Zea mays), 5'ss of exon 6
lower sequence: AT1G36180.1 (Arabidopsis thaliana), 5'ss of exon 5
GTTCATAATGATGATGAGGTTAGAGCGCTGTTTAAGCAAGTACAAGGTGAAGTCCCTGGCTCCCCAATATTTGTCATGAGGCTTGCATCCCAGgttagtttttttttttcctttctgaaatttatattccataccttttcacctttagttacccttgtattttctggaagcttcatctgatgcattattgaca
||||||||||||||||||||||| || || || |||||||| |||||||| ||||| ||||| || |||||| | |||| | |||| || ||||| |           |   | || || | ||| ||    | ||    |    |  ||| | | ||| |   ||| |  ||| |   ||    | | |   
GTTCATAATGATGATGAGGTTAGGGCTCTATTCAAGCAAGTTCAAGGTGAGGTCCCGGGCTCGCCGATATTTATAATGAAGGTTGCTTCACAGgtaa-----------tggctacttaactatatcttttg-atctcaatataactgattaacttagtaatacgtgggatgttctttatatattgtgtag---

upper sequence: GRMZM5G858094_T01 (Zea mays), 5'ss of exon 6
lower sequence: Vv18s0001g04980.t01 (Vitis vinifera), 5'ss of exon 5
GTTCATAATGATGATGAGGTTAGAGCGCTGTTTAAGCAAGTACAAGGTGAAGTCCCTGGCTCCCCAATATTTGTCATGAGGCTTGCATCCCAGgttagtttttttttttcctttctgaaatttatattccataccttttc-acctttagttacccttgt--attttctg----gaagcttcatctgatgcattattgaca-
||||||||||||||||| || |  ||  |||| |||||||| ||||||||||| ||||||||||| |||||    |||| | |||| ||||||||   | || | |  | |  |||||  |||  || |    ||||||  |  |  |||| |    ||  | ||  |     ||   ||| | || |   ||      | 
GTTCATAATGATGATGAAGTCAAGGCTTTGTTCAAGCAAGTTCAAGGTGAAGTTCCTGGCTCCCCCATATTCACGATGAAGGTTGCTTCCCAGgt-gatattatctactgcgctctga--tttgaatgctgagccttttagatttccagttgctggagtttacttcttattctgacaattcgtttggtttcttcaaactag