Sequence
atgc intronic sequence ATGC exonic sequenceTGAAGTAGATTCTCAATGGCCAAAGGGCCATTGTGTAGCAGTTAGAATTACTAGTGAGGACCCAGATGATGGTTTCAAACCTACTGGTGGGAAAGTGAAGgtaagttttctagatcacatgtattatatatcgttcaaagagattaagtttggttaaatgactaggtcttgattttttatctttcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM5G858094_T02 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os05g22940.1 (Oryza sativa), 5'ss of exon 12
TGAAGTAGATTCTCAATGGCCAAAGGGCCATTGTGTAGCAGTTAGAATTACTAGTGAGGACCCAGATGATGGTTTCAAACCTACTGGTGGGAAAGTGAAGgtaagttttctagatcacatgtattatatatcgttcaaa----gagattaagtttggttaaatgactaggtcttgattttttatctttcag
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TGAAGTAGATTCTAAATGGCCAAAAGGCCACTGCGTAGCTGTTAGAATAACTAGCGAGGATCCAGATGATGGGTTTAAGCCTACTGGTGGAAAAGTAAAGgtgcggtttcctgatgttaggtgt-atgaattgaacacattgctatattgcagctagtgaaatgactggatcatggttctcttattttcag
upper sequence: GRMZM5G858094_T02 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA04G11550.1 (Glycine max), 5'ss of exon 8
TGAAGTAGATTCTCAATGGCCAAAGGGCCATTGTGTAGCAGTTAGAATTACTAGTGAGGACCCAGATGATGGTTTCAAACCTACTGGTGGGAAAGTGAAGgtaagttttctagatcacatgtattatatatcgttcaaagagattaagtttggttaaatgactaggtcttgattttttatctttcag
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CAAAGCACAATCTACGAGGCCAAAAGGTCATTGTGTGGCAGTGCGAGTAACTAGTGAGGACCCTGATGATGGTTTTAAGCCTACAAGTGGCAAAGTGCAGgttaatta-caagtccaacagcaatct-catcttttacttcattca--tccagtaacttgtactgagttcaagtatttgtgcag---
upper sequence: GRMZM5G858094_T02 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA06G11120.1 (Glycine max), 5'ss of exon 8
TGAAGTAGATTCTCAATGGCCAAAGGGCCATTGTGTAGCAGTTAGAATTACTAGTGAGGACCCAGATGATGGTTTCAAACCTACTGGTGGGAAAGTGAAGgtaagttttctagatcacatgtattatatatcgttcaaagagattaagtttggttaaatgactaggtcttgattttttatctttcag
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CAAAGCACAATCTACAAGGCCAAAAGGTCATTGTGTGGCTGTGCGAGTAACTAGTGAGGACCCTGATGATGGTTTTAAGCCTACAAGTGGCAAAGTGCAGgttaacta-caagtccaacagcaatat-catcttttacttcattca--tccagtaacttgtactgagttcaagtatttgtgcag---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32933506|gb|CF038318.1|CF038318EST: ATGGTTTCAAACCTACTGGTGGGAAAGTGAAG GAGATAAGTTTTAAAAGCAAGCCTAATGTTTGGGCCTACTTCTCAGTAAAG
genomic: ATGGTTTCAAACCTACTGGTGGGAAAGTGAAGgtaagttttc ... tatctttcagGAGATAAGTTTTAAAAGCAAGCCTAATGTTTGGGCCTACTTCTCAGTAAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGAAGTAGATTCTCAATGGCCAAAGGGCCATTGTGTAGCAGTTAGAATTACTAGTGAGGACCCAGATGATGGTTTCAAACCTACTGGTGGGAAAGTGAAGgtaagttttctagatcacatgtattatatatcgttcaaagagattaagtttggttaaatgactaggtcttgattttttatctttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG