Sequence
atgc intronic sequence ATGC exonic sequenceGAGATAAGTTTTAAAAGCAAGCCTAATGTTTGGGCCTACTTCTCAGTAAAGgtaacttgttaactttagtacgctgtcacattattcttttgtgaaaataatttgaacggttctctttgtatttcaaccatccatcgtctcatttagcacacaaatatttgcactgacccccctccccttatctgctttcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM5G858094_T02 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os05g22940.1 (Oryza sativa), 5'ss of exon 13
GAGATAAGTTTTAAAAGCAAGCCTAATGTTTGGGCCTACTTCTCAGTAAAGgtaacttgttaactttagtacgctgtcacattattctt-ttgtgaaaataatttgaacggttctctttgtatttcaaccatccatcgtctcatttagcacacaaatatttgcactgacccccctccccttatctgctttcag
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GAGATAAGTTTCAAGAGTAAACCAAATGTTTGGGCCTATTTCTCAGTAAAGgtagtcc-tcaatattgttgcactgccacattatttgagttgtcctaacaatt-gtgctgcaattgttagttttcaactatttgttgttctgtttggttgactggtaccctctctttgcag---------------------
upper sequence: GRMZM5G858094_T02 (Zea mays), 5'ss of exon 11
lower sequence: GLYMA04G11550.1 (Glycine max), 5'ss of exon 9
GAGATAAGTTTTAAAAGCAAGCCTAATGTTTGGGCCTACTTCTCAGTAAAGgtaacttgttaactttagtacgctgtca-cattattcttttgtgaaaataatttgaacggttctctttgtatttcaaccatccatcgtctcatttagcacacaaatatttgcactgacccccctccccttatctgctttcag
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GAGCTTAGCTTTAAAAGCAAGCCAAATGTGTGGGCATACTTCTCTGTCAAGgtaagtcttctgtttc--ttcaatgcaggcataact------taaaaatg--ttgg--ggtgctaaagttttttgaactatttgcag-------------------------------------------------------
upper sequence: GRMZM5G858094_T02 (Zea mays), 5'ss of exon 11
lower sequence: GLYMA06G11120.1 (Glycine max), 5'ss of exon 9
GAGATAAGTTTTAAAAGCAAGCCTAATGTTTGGGCCTACTTCTCAGTAAAGgtaacttgttaactttagtacgctgtcacattattctt-ttgtgaaaataatttgaacggttctctttgtatttcaaccatccatcgtctcatttagcacacaaatatttgcactgacccccctccccttatctgctttcag
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GAGCTTAACTTTAAAAGCAAGCCAAATGTGTGGGCGTACTTCTCTGTCAAGgtaagtcttctgttcttcaatgcaggcatagattaaatgttggggtgctaaatttttttggactatttgcag----------------------------------------------------------------------
upper sequence: GRMZM5G858094_T02 (Zea mays), 5'ss of exon 11
lower sequence: Vv18s0001g04980.t01 (Vitis vinifera), 5'ss of exon 10
GAGATAAGTTTTAAAAGCAAGCCTAATGTTTGGGCCTACTTCTCAGTAAAGgtaacttgttaactttagtacgctgtcac------attattcttttgtgaaaataatttgaacggttctctttgtatttcaaccatccatcgtctcatttagcacacaaatatttgcactgacccccctccccttatctgctttcag
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GAGCTGAGTTTTAAAAGCAAGCCAAATGTGTGGGCATACTTCTCTGTTAAGgtatatctattatcatagaactcaatgaaggatcaaatattaatctgtcaaagtaa---gaatgaat-tattaacatgtctattattatgatttgcag-------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32933506|gb|CF038318.1|CF038318EST: AGATAAGTTTTAAAAGCAAGCCTAATGTTTGGGCCTACTTCTCAGTAAAG TCTGGTGGAGGCATTCATGAATTTGCTGATTCTCAGTTCG
genomic: AGATAAGTTTTAAAAGCAAGCCTAATGTTTGGGCCTACTTCTCAGTAAAGgtaacttgtt ... ctgctttcagTCTGGTGGAGGCATTCATGAATTTGCTGATTCTCAGTTCG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAGATAAGTTTTAAAAGCAAGCCTAATGTTTGGGCCTACTTCTCAGTAAAGgtaacttgttaactttagtacgctgtcacattattcttttgtgaaaataatttgaacggttctctttgtatttcaaccatccatcgtctcatttagcacacaaatatttgcactgacccccctccccttatctgctttcag
- - - - - - - AAGCAA
- - - - - - - AGCAAG