Sequence
atgc intronic sequence ATGC exonic sequenceTTGGATGGAAACAGCCATGTAATTTATGCAGAAGAAGAAGCTGGTGGTACACGGCTTCAGATTGATGGAAAGACATGTTTATTGCAGgtaaatactcccttcttcctttatattcttgttgtctgattgtataactttgctagattatttgtataatttattattgcatttcaccccactaacttatctttaaaagatgggttctgttgtttgcttcagcaggcgacatcacataagaaaattgtgattaatctttgttttcttgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM5G858094_T01 (Zea mays), 5'ss of exon 18
lower sequence: LOC_Os05g22940.1 (Oryza sativa), 5'ss of exon 20
TTGGATGGAAACAGCCATGTAATTTATGCAGAAGAAGAAGCTGGTGGTACACGGCTTCAGATTGATGGAAAGACATGTTTATTGCAGgtaaatactcccttcttcctttatattcttgttgtc-tgattgtataac-tttgctagat-tatttgtataatttattattgcatttcaccccactaacttatctttaaaagatgggttctgttgtttgcttcagcaggcgacatcacataagaaaattgtgattaatctttgttttcttgcag
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CTGGATGGAAACAGCCATGTAATTTATGCTGAAGAAGAGGCCAGTGGTACACGACTTCTTATTGATGGAAAGACATGCATGTTACAGgtaatgatagccttgttctttttagttctagtcacggtgtttgcttgctatttgttgtatctatttaatgcattcactaat-tactatattagtttgcatcatcaagttaaaatggaacttctttcttgcag----------------------------------------------------
upper sequence: GRMZM5G858094_T01 (Zea mays), 5'ss of exon 18
lower sequence: GLYMA06G11120.1 (Glycine max), 5'ss of exon 17
TTGGATGGAAACAGCCATGTAATTTATGCAGAAGAAGAAGCTGGTGGTACACGGCTTCAGATTGATGGAAAGACATGTTTATTGCAGgtaaat--actcccttcttcctttatattcttgttgtctgattgtataactttgctagattatttgtataatttattattgcatttcaccccactaacttatctttaaaagatgggttctgttgtttgcttcagcaggcgacatcacataagaaaattgtgattaatctttgttttcttgcag
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TTGGATGGAAACAGTCATGTAATATATGCAGAGGAAGAAGCAGCTGGAACTCGCCTTCTAATAGATGGAAGGACTTGCTTGCTTCAGgtgaaatgagttcagttttaccttaactatttcttttgtggctgaggtaagtttctaaacctctctttt--tttttttatgcag---------------------------------------------------------------------------------------------------
upper sequence: GRMZM5G858094_T01 (Zea mays), 5'ss of exon 18
lower sequence: GLYMA04G11550.1 (Glycine max), 5'ss of exon 17
TTGGATGGAAACAGCCATGTAATTTATGCAGAAGAAGAAGCTGGTGGTACACGGCTTCAGATTGATGGAAAGACATGTTTATTGCAGgtaaat--actcccttcttcctttatattcttgttgtctgattgta-taactttgctagattatttgtataatttattattgcatttcaccccactaacttatctttaaaagatgggttctgttgtttgcttcagcaggcgacatcacataagaaaattgtgattaatctttgttttcttgcag
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TTGGATGGAAACAGTCATGTAATATATGCAGAGGAAGAAGCAGCTGGAACTCGCCTTCTAATAGATGGAAGGACTTGCTTGCTTCAGgtgaaatgagttcatttttaccttaactatttcttttgtggctgaggtaagtttctaaacctcttttttctatgcag-----------------------------------------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32803950|gb|CD956186.1|CD956186EST: AAGCTGGTGGTACACGGCTTCAGATTGATGGAAAGACATGTTTATTGCAG AATGACCATGATCCATCAAAGTTATTAGCTGAGACACCCTGCAAACTTCTT
genomic: AAGCTGGTGGTACACGGCTTCAGATTGATGGAAAGACATGTTTATTGCAGgtaaatactc ... tttcttgcagAATGACCATGATCCATCAAAGTTATTAGCTGAGACACCCTGCAAACTTCTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTGGATGGAAACAGCCATGTAATTTATGCAGAAGAAGAAGCTGGTGGTACACGGCTTCAGATTGATGGAAAGACATGTTTATTGCAGgtaaatactcccttcttcctttatattcttgttgtctgattgtataactttgctagattatttgtataatttattattgcatttcaccccactaacttatctttaaaagatgggttctgttgtttgcttcagcaggcgacatcacataagaaaattgtgattaatctttgttttcttgcag
- - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA