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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACAAGATACCATTTGTAGCATTTAGTCAGGATCATTGTTATTCGATGTTTGACCACCCTTTGGTCGATTCTCTCCATTACATATACCATGAACCTAAGgtatgatgtggtttgtcagtttgttcttaatcactctctgggtatcgtattcctgtccattctgagtgtagttggaatttcttttgcag

Basic information

species Zea mays
transcript GRMZM5G836674_T02
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211210967|gb|FL454934.1|FL454934
EST:     CTCCATTACATATACCATGAACATAAG                         GCTAAGATAGTGCCATCTATTGGTCAGCTTTTAGAAACAGCTGAGATACAG
genomic: CTCCATTACATATACCATGAACCTAAGgtatgatgtg ... tcttttgcagGCTAAAATAGTGCCATCTATTGGTCAGCTTTTAGAAACAGCTGAGATACAG
EST: gi|211172338|gb|FL126915.1|FL126915
EST:     TTGACCACCCTTTGGTCGATTCTCTCCATTACATATACCATGAACCTRAG                         GCTAAAATAGTGCCATCTATTGGTCAGCTTTTAGAAACAGCTGAGATACAG
genomic: TTGACCACCCTTTGGTCGATTCTCTCCATTACATATACCATGAACCTAAGgtatgatgtg ... tcttttgcagGCTAAAATAGTGCCATCTATTGGTCAGCTTTTAGAAACAGCTGAGATACAG
EST: gi|211210968|gb|FL454935.1|FL454935
EST:     TGACCACCCTTTGGTCGATTCTCTCCATTTACATATACCATGAACCTAAG                         GCTAAAATAGTGCCATCTATTGGTCAGCTTTTAGAAACAGCTGAGATACAG
genomic: TGACCACCCTTTGGTCGATTCTCTCCA-TTACATATACCATGAACCTAAGgtatgatgtg ... tcttttgcagGCTAAAATAGTGCCATCTATTGGTCAGCTTTTAGAAACAGCTGAGATACAG
EST: gi|211190907|gb|FL449388.1|FL449388
EST:     CCATGAACCTAAG                         GTTAAAATAGTGCCATCTATTGGTCAGCTTTTAGAAACAGCTGAGATACAG
genomic: CCATGAACCTAAGgtatgatgtg ... tcttttgcagGCTAAAATAGTGCCATCTATTGGTCAGCTTTTAGAAACAGCTGAGATACAG