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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGTTTACAGGACAAGTGACAAATGACCTGAAGAAAGCTGGCAGCCTTAGATTTTACAAACCAAAATTCAAATATATTTTTTGTGATATGGATGgtatgtctttactctttgaacatctttacagtctatttgctatagttttcacttactattgttttccccctttgaacaag

Basic information

species Zea mays
transcript GRMZM5G836674_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G836674_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os01g53720.1 (Oryza sativa), 5'ss of exon 5
AATGTTTACAGGACAAGTGACAAATGACCTGAAGAAAGCTGGCAGCCTTAGATTTTACAAACCAAAATTCAAATATATTTTTTGTGATATGGATGgtatgtc-tttactctttgaacatctttacagtctatttgctatagttttcacttactattg-ttttccccctttgaacaag
           | |||||||||| ||  || || | |||||| ||||| |||||||| | |||||||||||||||||| || ||||||||||||||||| || ||| ||||||| | || |    | ||||     | | ||||  | |||| | || | ||      || || |||
-----------GGCAAGTGACAAGTGGTCTAAAAAGAGCTGGAAGCCTAAGATTTTATAGACCAAAATTCAAATATATCTTCTGTGATATGGATGgtatatcatttgctctttgcatatatcactactctagaca-tgt-gtttatatttaccagtgatattttttaatttaaaaag

upper sequence: GRMZM5G836674_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA17G26630.1 (Glycine max), 5'ss of exon 5
AATGTTTACAGGACAAGTGACAAATGACCTGAAGAAAGCTGGCAGCCTTAGATTTTACAAACCAAAATTCAAATATATTTTTTGTGATATGGATGgtatgtctttactctttgaacatctttacagtctatttgctatagttttcacttactattgttttccccctttgaacaag---
                          ||  ||||||||  ||||| |||||||||||||||||||| ||||  ||||| || |||||||||||||||| |  |  |       |   |||||| |   |  ||  | |  | |  |  |  || |    |||    ||  | |     
--------------------------ACAGGAAGAAAGAAGGCAGTCTTAGATTTTACAAACCAAAGTTCAGCTATATCTTCTGTGATATGGATGgtaagattgcagcaaagcacactctttatatattccttagtcttttatctagattttaatagactcctgtattatatacaaag

upper sequence: GRMZM5G836674_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA14G21790.1 (Glycine max), 5'ss of exon 5
AATGTTTACAGGACAAGTGACAAATGACCTGAAGAAAGCTGGCAGCCTTAGATTTTACAAACCAAAATTCAAATATATTTTTTGTGATATGGATGgtatgtctttactctttgaacatctttacagtctatttgctatagttttc-acttactattgttttccccctttgaacaag-
                          ||  ||||||||  ||||| |||||||||||||||||||| |||| |||||| || |||||||||||||||| |  |  | |     |   ||| || |   || ||| | |  || || |  |  || |   ||||    ||  ||||  
--------------------------ACAGGAAGAAAGAAGGCAGTCTTAGATTTTACAAACCAAAGTTCAGATATATCTTCTGTGATATGGATGgtaagattgcagtgaagcacactctgtagatattacttggtttttttatctagattttaatagattcctgtattatacaaag