1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...aatatcattggatcgattgcacatttttatgttacatgtattcactatttgtgatgctaagacaagttgcagcttaacatgccatgtttttcatattcagAAAGTATTGTTCCTTGAAACTCCTGAGAGGATTTCGTCTGCACTGAGACCGTACTGGGCAAAGGCGATAGAGGGAAGGGCCCATGTTGTTCAGGCACAGC
species | Zea mays |
transcript | GRMZM5G836674_T02 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CTAAGATAGTGCCATCTATTGGTCAGCTTTTAGAAACAGCTGAGATACAG AAAGTATTGTTCCTTGAAACTCCTGAGAGGATTTCGTCTGCACTGAGACCGEST: gi|211172338|gb|FL126915.1|FL126915
genomic: CTAAAATAGTGCCATCTATTGGTCAGCTTTTAGAAACAGCTGAGATACAGgtaagtatgt ... tcatattcagAAAGTATTGTTCCTTGAAACTCCTGAGAGGATTTCGTCTGCACTGAGACCG
EST: CTAAAATAGTGCCATCTATTGGTCAGCTTTTAGAAACAGCTGAGATACAG AAAGTATTGTTCCTTGAAACTCCTGAGAGGATTTCGTCTGCACTGAGACCGEST: gi|37380377|gb|CF626997.1|CF626997
genomic: CTAAAATAGTGCCATCTATTGGTCAGCTTTTAGAAACAGCTGAGATACAGgtaagtatgt ... tcatattcagAAAGTATTGTTCCTTGAAACTCCTGAGAGGATTTCGTCTGCACTGAGACCG
EST: CATCTATNGGTCAGCTTTTAGAAACAGCTGAGATACAG AAAGTATTGTTCCTTGAAACTCCTGAGAGGATTTCGTCTGCATTAAGACCGEST: gi|211210968|gb|FL454935.1|FL454935
genomic: CATCTATTGGTCAGCTTTTAGAAACAGCTGAGATACAGgtaagtatgt ... tcatattcagAAAGTATTGTTCCTTGAAACTCCTGAGAGGATTTCGTCTGCACTGAGACCG
EST: CTAAAATAGTGCCATCTATTGGTCAGCTTTTAGAAACAGCTGAGATACAG AAAGTATTGTTCCTTGAAACTCCTGAGAGGATTTCGTCTGCACTGAGACCGEST: gi|211190907|gb|FL449388.1|FL449388
genomic: CTAAAATAGTGCCATCTATTGGTCAGCTTTTAGAAACAGCTGAGATACAGgtaagtatgt ... tcatattcagAAAGTATTGTTCCTTGAAACTCCTGAGAGGATTTCGTCTGCACTGAGACCG
EST: TTAAAATAGTGCCATCTATTGGTCAGCTTTTAGAAACAGCTGAGATACAG AAAGTATTGTTCCTTGAAACTCCTGAGAGGATTTCGTCTGCACTGAGACCGEST: gi|32912236|gb|CF017048.1|CF017048
genomic: CTAAAATAGTGCCATCTATTGGTCAGCTTTTAGAAACAGCTGAGATACAGgtaagtatgt ... tcatattcagAAAGTATTGTTCCTTGAAACTCCTGAGAGGATTTCGTCTGCACTGAGACCG
EST: CTAAAATAGTGCCATCTATTGGTCAGCTTTTAGAAACAGCTGAGATACAG AAAGTATTGTTCCTTGAAACTCCTGAGAGGATTTCGTCTGCACTGAGACCGEST: gi|149033217|gb|EE155000.2|EE155000
genomic: CTAAAATAGTGCCATCTATTGGTCAGCTTTTAGAAACAGCTGAGATACAGgtaagtatgt ... tcatattcagAAAGTATTGTTCCTTGAAACTCCTGAGAGGATTTCGTCTGCACTGAGACCG
EST: AATAGTGCCATCTATTGGTCAGCTTTTAGAAACAGCTGAGATACAG AAAGTATTGTTCCTTGAAACTCCTGAGAGGATTTCGTCTGCACTGAGACCG
genomic: AATAGTGCCATCTATTGGTCAGCTTTTAGAAACAGCTGAGATACAGgtaagtatgt ... tcatattcagAAAGTATTGTTCCTTGAAACTCCTGAGAGGATTTCGTCTGCACTGAGACCG
tatttgtgatgctaagacaagttgcagcttaacatgccatgtttttcatattcagAAAGTATTGTTCCTTGAAACTCCTGAGAGGATTTCGTCTGCACTGAGACCGTACTGGGCAAAGGCGATAGAGGGAAGGGCCCATGTTGTTCAGGCACAGC
gcttaac putative branch site (score: 3)
tgtttttc putative PPT
atgtttttcatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatatcattggatcgattgcacatttttatgttacatgtattcactatttgtgatgctaagacaagttgcagcttaacatgccatgtttttcatattcagAAAGTATTGTTCCTTGAAACTCCTGAGAGGATTTCGTCTGCACTGAGACCGTACTGGGCAAAGGCGATAGAGGGAAGGGCCCATGTTGTTCAGGCACAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - gcacatt
- - - - - - - - - - - - - ttatgtt
- - - - - - - - - - - - - - - - - catgtat
- - - - - - - - - - - - - - - - - - - - - - - - - -tgatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acatgcc