1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TCAGGCACAGCCTGATATGCTTGAACTTGTACCACCTGCAACTTCGAAAGGCAATGGTGTGAAGGTTCTGTTGAACCACCTTTCCATTAGTCCAGATGAGgtagaattaatctagtctccaactaatatatttgcattacactaataaaaacttgctaaccttagctgaggtagaacattgaagtagctgcagaaaaggt...
species | Zea mays |
transcript | GRMZM5G836674_T02 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GCAATGGTGTGAAGGTTCTGTTGAACCACCTTTCCATTAGTCCAGATGAG GTAATGGCAATTGGTGACGGAGAAAATGACATTGAAATGTTGCAACTAGCTEST: gi|211172338|gb|FL126915.1|FL126915
genomic: GCAATGGTGTGAAGGTTCTGTTGAACCACCTTTCCATTAGTCCAGATGAGgtagaattaa ... gttgtgcaagGTAATGGCAATTGGTGACGGAGAAAATGACATTGAAATGTTGCAACTAGCT
EST: GCAATGGTGTGAAGGTTCTGTTGAACCACCTTTCCATTAGTCCAGATGAG GTAATGGCAATTGGTGACGGAGAAAATGACATTGAAATGTTGCAACTAGCTEST: gi|37380377|gb|CF626997.1|CF626997
genomic: GCAATGGTGTGAAGGTTCTGTTGAACCACCTTTCCATTAGTCCAGATGAGgtagaattaa ... gttgtgcaagGTAATGGCAATTGGTGACGGAGAAAATGACATTGAAATGTTGCAACTAGCT
EST: GCAATGGTGTGAAGGTTCTGTTGAACCACCTTTCCATTAGTCCAGATGAG GTAATGGCAATTGGTGACGGAGAAAATGACATTGAAATGTTGCAACTAGCTEST: gi|211172339|gb|FL126916.1|FL126916
genomic: GCAATGGTGTGAAGGTTCTGTTGAACCACCTTTCCATTAGTCCAGATGAGgtagaattaa ... gttgtgcaagGTAATGGCAATTGGTGACGGAGAAAATGACATTGAAATGTTGCAACTAGCT
EST: GCAATGGTGTGAAGGTTCTGTTGAACCACCTTTCCATTAGTCCAGATGAG GTAATGGCAATTGGTGACGGAGAAAATGACATTGAAATGTTGCAACTAGCTEST: gi|211210968|gb|FL454935.1|FL454935
genomic: GCAATGGTGTGAAGGTTCTGTTGAACCACCTTTCCATTAGTCCAGATGAGgtagaattaa ... gttgtgcaagGTAATGGCAATTGGTGACGGAGAAAATGACATTGAAATGTTGCAACTAGCT
EST: GCAATGGTGTGAAGGTTCTGTTGAACCACCTTTCCATTAGTCCAGATGAG GTAATGGCAATTGGTGACGGAGAAAATGACATTGAAATGTTGCAACTAGCTEST: gi|211190907|gb|FL449388.1|FL449388
genomic: GCAATGGTGTGAAGGTTCTGTTGAACCACCTTTCCATTAGTCCAGATGAGgtagaattaa ... gttgtgcaagGTAATGGCAATTGGTGACGGAGAAAATGACATTGAAATGTTGCAACTAGCT
EST: GCAATGGTGTGAAGGTTCTGTTGAACCACCTTTCCATTAGTCCAGATGAG GTAATGGCAATTGGTGACGGAGAAAATGACATTGAAATGTTGCAACTAGCTEST: gi|211391895|gb|FL468022.1|FL468022
genomic: GCAATGGTGTGAAGGTTCTGTTGAACCACCTTTCCATTAGTCCAGATGAGgtagaattaa ... gttgtgcaagGTAATGGCAATTGGTGACGGAGAAAATGACATTGAAATGTTGCAACTAGCT
EST: GCAATGGTGTGAAGGTTCTGTTGAACCACCTTTCCATTAGTCCAGATGAG GTAATGGCAATTGGTGACGGAGAAAATGACATTGAAATGTTGCAACTAGCTEST: gi|32912236|gb|CF017048.1|CF017048
genomic: GCAATGGTGTGAAGGTTCTGTTGAACCACCTTTCCATTAGTCCAGATGAGgtagaattaa ... gttgtgcaagGTAATGGCAATTGGTGACGGAGAAAATGACATTGAAATGTTGCAACTAGCT
EST: GCAATGGTGTGAAGGTTCTGTTGAACCACCTTTCCATTAGTCCAGATGAG GTAATGGCAATTGGTGACGGAGAAAATGACATTGAAATGTTGCAACTAGCTEST: gi|149033217|gb|EE155000.2|EE155000
genomic: GCAATGGTGTGAAGGTTCTGTTGAACCACCTTTCCATTAGTCCAGATGAGgtagaattaa ... gttgtgcaagGTAATGGCAATTGGTGACGGAGAAAATGACATTGAAATGTTGCAACTAGCT
EST: GCAATGGTGTGAAGGTTCTGTTGAACCACCTTTCCATTAGTCCAGATGAG GTAATGGCAATTGGTGACGGAGAAAATGACATTGAAATGTTGCAACTAGCT
genomic: GCAATGGTGTGAAGGTTCTGTTGAACCACCTTTCCATTAGTCCAGATGAGgtagaattaa ... gttgtgcaagGTAATGGCAATTGGTGACGGAGAAAATGACATTGAAATGTTGCAACTAGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAGGCACAGCCTGATATGCTTGAACTTGTACCACCTGCAACTTCGAAAGGCAATGGTGTGAAGGTTCTGTTGAACCACCTTTCCATTAGTCCAGATGAGgtagaattaatctagtctccaactaatatatttgcattacactaataaaaacttgctaaccttagctgaggtagaacattgaagtagctgcagaaaaggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aataaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcagaaaa