1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tgaagaatactgttgtattcttatcacataaattgtgcatcattgactatacctgtgaccattatccctattctcatcaagtccatacttccacttgtagGGGCTGTTGGTTTATGGTTTGGAAGGGAGACGGATTTATAAAAGAAATTTGGACCAAGAAGTATGTAGAGAG
species | Zea mays |
transcript | GRMZM5G836674_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
actatacctgtgaccattatccctattctcatcaagtccatacttccacttgtagGGGCTGTTGGTTTATGGTTTGGAAGGGAGACGGATTTATAAAAGAAATTTGGACCAAGAAGTATGTAGAGAG
cattgac putative branch site (score: 3)
cttccactt putative PPT
attat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaagaatactgttgtattcttatcacataaattgtgcatcattgactatacctgtgaccattatccctattctcatcaagtccatacttccacttgtagGGGCTGTTGGTTTATGGTTTGGAAGGGAGACGGATTTATAAAAGAAATTTGGACCAAGAAGTATGTAGAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
-gaagaata
- - - - -ctgttgt
- - - - - - - - - - - - -acataaa
- - - - - - - - - - - - - - - - - gtgcatc
- - - - - - - - - - - - - - - - - - - - - - - - atacctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccatact