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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAACTTCATCCAAGATCTTAACAAAGAATGGAGAGATGTGGACTGCGCTACTGATATACTCTCAATGTCCCAGTACATTCCAGATCTTGATGTTCCCATCgtaagtaggaatacatttttaaatgaggttatgctcttagctttacccgtgcatcttattttcttctccttatctgtatctttttaatgcag

Basic information

species Zea mays
transcript GRMZM5G836674_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G836674_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g53720.1 (Oryza sativa), 5'ss of exon 2
TAACTTCATCCAAGATCTTAACAAAGAATGGAGAGATGTGGACTGCGCTACTGATATACTCTCAATGTCCCAGTACATTCCAGATCTTGATGTTCCCATCgtaagtaggaatacatttttaaatgag-gttatgctcttagctttacccgtgcatcttattttcttctccttatctgtatctttttaatgcag
 |||||||||||  | ||||||||||||||||||| ||  ||| ||  || ||| || ||||||||||| || |||||||| |||||||||||||| || ||||| |  || |    ||||  |||  | | | || ||||   | ||     ||||| || | || ||   || | | |  |   |      
CAACTTCATCCAGAACCTTAACAAAGAATGGAGAGGTGAAGACAGCTGTATTGAAATGCTCTCAATGTCACAATACATTCCTGATCTTGATGTTCCTATTgtaaggaaaaaaaatcctttatttgaatgctgttcttttagacatgcc-----atcttgttgtattttctgaatttattttctcgcag-----