1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtatgatgtggtttgtcagtttgttcttaatcactctctgggtatcgtattcctgtccattctgagtgtagttggaatttcttttgcagGCTAAAATAGTGCCATCTATTGGTCAGCTTTTAGAAACAGCTGAGATACAG
species | Zea mays |
transcript | GRMZM5G836674_T02 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CTCCATTACATATACCATGAACATAAG GCTAAGATAGTGCCATCTATTGGTCAGCTTTTAGAAACAGCTGAGATACAGEST: gi|211172338|gb|FL126915.1|FL126915
genomic: CTCCATTACATATACCATGAACCTAAGgtatgatgtg ... tcttttgcagGCTAAAATAGTGCCATCTATTGGTCAGCTTTTAGAAACAGCTGAGATACAG
EST: TTGACCACCCTTTGGTCGATTCTCTCCATTACATATACCATGAACCTRAG GCTAAAATAGTGCCATCTATTGGTCAGCTTTTAGAAACAGCTGAGATACAGEST: gi|211210968|gb|FL454935.1|FL454935
genomic: TTGACCACCCTTTGGTCGATTCTCTCCATTACATATACCATGAACCTAAGgtatgatgtg ... tcttttgcagGCTAAAATAGTGCCATCTATTGGTCAGCTTTTAGAAACAGCTGAGATACAG
EST: TGACCACCCTTTGGTCGATTCTCTCCATTTACATATACCATGAACCTAAG GCTAAAATAGTGCCATCTATTGGTCAGCTTTTAGAAACAGCTGAGATACAGEST: gi|211190907|gb|FL449388.1|FL449388
genomic: TGACCACCCTTTGGTCGATTCTCTCCA-TTACATATACCATGAACCTAAGgtatgatgtg ... tcttttgcagGCTAAAATAGTGCCATCTATTGGTCAGCTTTTAGAAACAGCTGAGATACAG
EST: CCATGAACCTAAG GTTAAAATAGTGCCATCTATTGGTCAGCTTTTAGAAACAGCTGAGATACAG
genomic: CCATGAACCTAAGgtatgatgtg ... tcttttgcagGCTAAAATAGTGCCATCTATTGGTCAGCTTTTAGAAACAGCTGAGATACAG
tctctgggtatcgtattcctgtccattctgagtgtagttggaatttcttttgcagGCTAAAATAGTGCCATCTATTGGTCAGCTTTTAGAAACAGCTGAGATACAG
tttcttttgc CT-rich tract
aatttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgatgtggtttgtcagtttgttcttaatcactctctgggtatcgtattcctgtccattctgagtgtagttggaatttcttttgcagGCTAAAATAGTGCCATCTATTGGTCAGCTTTTAGAAACAGCTGAGATACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA