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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatattcttaacgaattttctaagttgatatgttatagaaatgctcgccactcatgatctaatcatgttcttggtgtctaagAATGTTTACAGGACAAGTGACAAATGACCTGAAGAAAGCTGGCAGCCTTAGATTTTACAAACCAAAATTCAAATATATTTTTTGTGATATGGATG

Basic information

species Zea mays
transcript GRMZM5G836674_T02
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G836674_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os01g53720.1 (Oryza sativa), 3'ss of exon 4
-------------------gtatattcttaacgaattttctaagttgatatgttatagaaatgctcgc-cactcatgatc-taatcatgttcttggtgtctaagAATGTTTACAGGACAAGTGACAAATGACCTGAAGAAAGCTGGCAGCCTTAGATTTTACAAACCAAAATTCAAATATATTTTTTGTGATATGGATG
                    | || |  |||    ||   | | ||   || ||  | |  ||||  | ||| ||||||  ||||   | | ||| || ||||||||||||||||| |||||||||| ||  || || | |||||| ||||| |||||||| | |||||||||||||||||| || |||||||||||||
gtgtgcttttttgagatttctgtagttataatcctttccattattttg-atcttgaaaaggtgctttcacacacatgatgataatgtagctattgctgcctaagaatgtttacagGGCAAGTGACAAGTGGTCTAAAAAGAGCTGGAAGCCTAAGATTTTATAGACCAAAATTCAAATATATCTTCTGTGATATGGATG

upper sequence: GRMZM5G836674_T02 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA14G21790.1 (Glycine max), 3'ss of exon 4
-------------------------------------------gtatattcttaacgaattttctaagttgatatgttatagaaatgctcgccactcatgatctaatcatgttcttggtgtctaagAATGTTTACAGGACAAGTGACAAATGACCTGAAGAAAGCTGGCAGCCTTAGATTTTACAAACCAAAATTCAAATATATTTTTTGTGATATGGATG
                                           | ||||| ||  | | ||||     |   |   ||     ||| |  |  |||     |   || |  |   |   |   || |||  ||| ||   || || |||| |||  ||||||||  ||||| |||||||||||||||||||| |||| |||||| || |||||||||||||
gtaattgtattttttactagtatgcctcagcaatcctctgcttgcatatttttttc-atttttggttatgcttcctttcctctaattcaagtaactgccacttgcataaaatgtatatggggaaataat-cttatagatgaattgtcaaaagACAGGAAGAAAGAAGGCAGTCTTAGATTTTACAAACCAAAGTTCAGATATATCTTCTGTGATATGGATG

upper sequence: GRMZM5G836674_T02 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA17G26630.1 (Glycine max), 3'ss of exon 4
-----------------gtatattcttaacgaattttctaagttgat--atgttatagaaatgctcgcc--------actcatgatctaatcatgttcttg----gtgtctaagAATGT----TTACAGGACAAGTGACAAATGACCTGAAGAAAGCTGGCAGCCTTAGATTTTACAAACCAAAATTCAAATATATTTTTTGTGATATGGATG
                    ||| | | |  |||  || || ||||   || || | |  ||| |  |         | ||| |     ||||  | | |     |||| |  | |  |    ||| ||   || || |||| |||  ||||||||  ||||| |||||||||||||||||||| ||||  ||||| || |||||||||||||
gtaattgtattttttactagtatgccttagcaatcctc-aacttgactaattttttggttatgtttcctttcctctaattcaagtaactatcacttgcataaaatgtgtatggggaaataatcttatagatgaattgtcaaaagACAGGAAGAAAGAAGGCAGTCTTAGATTTTACAAACCAAAGTTCAGCTATATCTTCTGTGATATGGATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatgttatagaaatgctcgccactcatgatctaatcatgttcttggtgtctaagAATGTTTACAGGACAAGTGACAAATGACCTGAAGAAAGCTGGCAGCCTTAGATTTTACAAACCAAAATTCAAATATATTTTTTGTGATATGGATG
                             atctaat  putative branch site (score: 3)
     ttatagaaat  TA-rich tract