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gtagagtactgtgtgctactttaaagatacattgtgttgttgctccaattctcttacatacctttgttcatgtgaccaaataatgcagATATATTGCTGTTGAATTTGCTTCTATCTGGAGGGGGATGGGTGCTGAAGTAGATTTGTTTTATCGAAGAGATCTTCCTCTAAG
species | Zea mays |
transcript | GRMZM5G806449_T03 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AATCCTGGGTGGCGG ATATATTGCTGTTGAATTTGCTTCTATCTGGAGGGGGATGGGTGCTGAAGTEST: gi|149099075|gb|EE185096.2|EE185096
genomic: AATCCTGGGTGGCGGgtagagtact ... aataatgcagATATATTGCTGTTGAATTTGCTTCTATCTGGAGGGGGATGGGTGCTGAAGT
EST: GCCTTGAGCTTGGAGGAGCTTTCAAAGCGCGCTGTATTCCTGGGTGGCGG ATATATTGCTGTTGAATTTGCTTCTATCTGGAGGGGGAEST: gi|148994377|gb|EE034060.2|EE034060
genomic: GCCTTGAGCTTGGAGGAGCTTCCAAAGCGCGCTGTAATCCTGGGTGGCGGgtagagtact ... aataatgcagATATATTGCTGTTGAATTTGCTTCTATCTGGAGGGGGA
EST: GCCTTGAGCTTGGAGGAGCTTCCAAAGCGCGCTGTAATCCTGGGTGGCGG ATATATTGCTGTTGAATTTGCTTCTATCTGGAGGGGGATGGGTGCTGAAGTEST: gi|211462691|gb|FL336836.1|FL336836
genomic: GCCTTGAGCTTGGAGGAGCTTCCAAAGCGCGCTGTAATCCTGGGTGGCGGgtagagtact ... aataatgcagATATATTGCTGTTGAATTTGCTTCTATCTGGAGGGGGATGGGTGCTGAAGT
EST: AATCCTGGGTGGCGG ATATATTGCTGTTGAATTTGCTTCTATCTGGAGGGGGATGGGTGCTGAAGTEST: gi|211123447|gb|FL321141.1|FL321141
genomic: AATCCTGGGTGGCGGgtagagtact ... aataatgcagATATATTGCTGTTGAATTTGCTTCTATCTGGAGGGGGATGGGTGCTGAAGT
EST: AATCCTGGGTGGCGG ATATATTGCTGTTGAATTTGCTTCTATCTGGAGGGGGATGGGTGCTGAAGTEST: gi|67026810|gb|CO455559.1|CO455559
genomic: AATCCTGGGTGGCGGgtagagtact ... aataatgcagATATATTGCTGTTGAATTTGCTTCTATCTGGAGGGGGATGGGTGCTGAAGT
EST: GCCTTGAGCTTGGAGGAGCTTCCAAAGCGCGCTGTAATCCTGGGTGGCGG ATATATTGCTGTTGAATTTGCTTCTATCTGGAGGGGGATGGGTGCTGAAGTEST: gi|149014256|gb|EE043820.2|EE043820
genomic: GCCTTGAGCTTGGAGGAGCTTCCAAAGCGCGCTGTAATCCTGGGTGGCGGgtagagtact ... aataatgcagATATATTGCTGTTGAATTTGCTTCTATCTGGAGGGGGATGGGTGCTGAAGT
EST: GCCTTGAGCTTGGAGGAGCTTCCAAAGCGCGCTGTAATCCTGGGTGGCGG ATATATTGCTGTTGAATTTGCTTCTATCEST: gi|24934176|gb|CA452394.1|CA452394
genomic: GCCTTGAGCTTGGAGGAGCTTCCAAAGCGCGCTGTAATCCTGGGTGGCGGgtagagtact ... aataatgcagATATATTGCTGTTGAATTTGCTTCTATC
EST: GCCTTGAGCTTGGAGGAGCTTCCAAAGCGCGCTGTAATCCTGGGTGGCGG ATATATTGNCTGTTGAATTTGCTCCTATCTGGAGGGGGATGGGTGCTGAAGEST: gi|211135367|gb|FL349825.1|FL349825
genomic: GCCTTGAGCTTGGAGGAGCTTCCAAAGCGCGCTGTAATCCTGGGTGGCGGgtagagtact ... aataatgcagATATATTG-CTGTTGAATTTGCTTCTATCTGGAGGGGGATGGGTGCTGAAG
EST: AATCCTGGGTGGCGG ATATATTGCTGTTGAATTTGCTTCTATCTGGAGGGGGATGGGTGCTGAAGTEST: gi|24934507|gb|CA452725.1|CA452725
genomic: AATCCTGGGTGGCGGgtagagtact ... aataatgcagATATATTGCTGTTGAATTTGCTTCTATCTGGAGGGGGATGGGTGCTGAAGT
EST: GCCTTGAGCTTGGAGGAGCTTCCAAAGCGCGCTGTAATCCTGGGTGGCGG ATATATTGCTGTTGAATTTGCTTCTATCTGGAGGGGGATGGGTGCTGAAGTEST: gi|211426648|gb|FL071976.1|FL071976
genomic: GCCTTGAGCTTGGAGGAGCTTCCAAAGCGCGCTGTAATCCTGGGTGGCGGgtagagtact ... aataatgcagATATATTGCTGTTGAATTTGCTTCTATCTGGAGGGGGATGGGTGCTGAAGT
EST: GCCTTGAGCTTGGAGGAGCTTCCAAAGCGCGCTGTAATCCTGGGTGGCGG ATATATTGCTGTTGAATTTGCTTCTATCTGGAGGGGGATGGGTGCTGAAGTEST: gi|148937231|gb|EC881413.2|EC881413
genomic: GCCTTGAGCTTGGAGGAGCTTCCAAAGCGCGCTGTAATCCTGGGTGGCGGgtagagtact ... aataatgcagATATATTGCTGTTGAATTTGCTTCTATCTGGAGGGGGATGGGTGCTGAAGT
EST: GCCTTGAGCTTGGAGGAGCTTCCAAAGCGCGCTGTAATCCTGGGTGGCGG ATATATTGCTGTTGAATTTGCTTCTATCTGGAGGGGGATGGGTGCTGAAGTEST: gi|211396212|gb|FL320934.1|FL320934
genomic: GCCTTGAGCTTGGAGGAGCTTCCAAAGCGCGCTGTAATCCTGGGTGGCGGgtagagtact ... aataatgcagATATATTGCTGTTGAATTTGCTTCTATCTGGAGGGGGATGGGTGCTGAAGT
EST: AATCCTGGGTGGCGG ATATATTGCTGTTGAATTTGCTTCTATCTGGAGGGGGATGGGTGCTGAAGTEST: gi|149077608|gb|EE166308.2|EE166308
genomic: AATCCTGGGTGGCGGgtagagtact ... aataatgcagATATATTGCTGTTGAATTTGCTTCTATCTGGAGGGGGATGGGTGCTGAAGT
EST: GCCTTGAGCTTGGAGGAGCTTCCAAAGCGCGCTGTAATCCTGGGGGGCGG ATATATTGCTGTTGAATTTGCTTCEST: gi|211460047|gb|FL333663.1|FL333663
genomic: GCCTTGAGCTTGGAGGAGCTTCCAAAGCGCGCTGTAATCCTGGGTGGCGGgtagagtact ... aataatgcagATATATTGCTGTTGAATTTGCTTC
EST: AATCCTGGGTGGCGG ATATATTGCTGTTGAATTTGCTTCTATCTGGAGGGGGATGGGTGCTGAAGTEST: gi|76293305|gb|DV032873.1|DV032873
genomic: AATCCTGGGTGGCGGgtagagtact ... aataatgcagATATATTGCTGTTGAATTTGCTTCTATCTGGAGGGGGATGGGTGCTGAAGT
EST: GCCTTGAGCTTGGAGGAGCTTCCAAAGCGCGCTGTAATCCTGGGTGGCGG ATATATTGCTGTTGAATTTGCTTCTATCTGGAGGGGGATGGGTGCTGAAGTEST: gi|149108741|gb|EE292941.2|EE292941
genomic: GCCTTGAGCTTGGAGGAGCTTCCAAAGCGCGCTGTAATCCTGGGTGGCGGgtagagtact ... aataatgcagATATATTGCTGTTGAATTTGCTTCTATCTGGAGGGGGATGGGTGCTGAAGT
EST: CCTTGAGCTTGGAGGAGCTTCCAAAGCGCGCTGNTA-TCCTGGGTGGCGG ATATATTGCTGTTGAATTTGCTTCTATCTGEST: gi|33942527|gb|CF349127.1|CF349127
genomic: CCTTGAGCTTGGAGGAGCTTCCAAAGCGCGCTG-TAATCCTGGGTGGCGGgtagagtact ... aataatgcagATATATTGCTGTTGAATTTGCTTCTATCTG
EST: GCCTTGAGCTTGGAGGAGCTTCCAAAGCGCGCTGTAATCCTGGGTGGCGG ATATATTGCTGTTGAATTTGCTTCTATCTGGAGGGGGATGGGTGCTGAAGTEST: gi|211540781|gb|FL336428.1|FL336428
genomic: GCCTTGAGCTTGGAGGAGCTTCCAAAGCGCGCTGTAATCCTGGGTGGCGGgtagagtact ... aataatgcagATATATTGCTGTTGAATTTGCTTCTATCTGGAGGGGGATGGGTGCTGAAGT
EST: AATCCTGGGTGGCGG ATATATTGCTGTTGAATTTGCTTCTATCTGGAGGGGGATGGGTGCTGAAGTEST: gi|32938226|gb|CF043045.1|CF043045
genomic: AATCCTGGGTGGCGGgtagagtact ... aataatgcagATATATTGCTGTTGAATTTGCTTCTATCTGGAGGGGGATGGGTGCTGAAGT
EST: GCCTTGAGCTTGGAGGAGCTTCCAAAGCGCGCTGTAATCCTGGGTGGCGG ATATATTGCTGTTGAATTTGCTTCTATCTGGAGGGGGATGGGTGCTGAAGTEST: gi|31611973|gb|CD568595.1|CD568595
genomic: GCCTTGAGCTTGGAGGAGCTTCCAAAGCGCGCTGTAATCCTGGGTGGCGGgtagagtact ... aataatgcagATATATTGCTGTTGAATTTGCTTCTATCTGGAGGGGGATGGGTGCTGAAGT
EST: GCCTTGAGCTTGGAGGAGCTTCCAAAGCGCGCTGTAATCCTGGGTGGCGG ATATATTGCTGTTGAATEST: gi|76012767|gb|DT939937.1|DT939937
genomic: GCCTTGAGCTTGGAGGAGCTTCCAAAGCGCGCTGTAATCCTGGGTGGCGGgtagagtact ... aataatgcagATATATTGCTGTTGAAT
EST: GCCTTGAGCTTGGAGGAGCTTCCAAAGCGCGCTGTAATCCTGGGTGGCGG ATATATTGCTGTTGAATTTGCTTCTATCTGGAGGGGGATGGGTGCTGAAGTEST: gi|211318389|gb|FL341246.1|FL341246
genomic: GCCTTGAGCTTGGAGGAGCTTCCAAAGCGCGCTGTAATCCTGGGTGGCGGgtagagtact ... aataatgcagATATATTGCTGTTGAATTTGCTTCTATCTGGAGGGGGATGGGTGCTGAAGT
EST: AATCCTGGGTGGCGG ATATATTGCTGTTGAAYTTGCTTCTATCTGGAGGGGGATGGGTGCTGAAGTEST: gi|24934516|gb|CA452734.1|CA452734
genomic: AATCCTGGGTGGCGGgtagagtact ... aataatgcagATATATTGCTGTTGAATTTGCTTCTATCTGGAGGGGGATGGGTGCTGAAGT
EST: GCCTTGAGCTTGGAGGAGCTTCCAAAGCGCGCTGTAATCCTGGGTGGCGG ATATATTGCTGTTGAATTTGCTTCTATCTGGAGGGGGATGGGTGCTGAAGT
genomic: GCCTTGAGCTTGGAGGAGCTTCCAAAGCGCGCTGTAATCCTGGGTGGCGGgtagagtact ... aataatgcagATATATTGCTGTTGAATTTGCTTCTATCTGGAGGGGGATGGGTGCTGAAGT
gtgttgttgctccaattctcttacatacctttgttcatgtgaccaaataatgcagATATATTGCTGTTGAATTTGCTTCTATCTGGAGGGGGATGGGTGCTGAAGTAGATTTGTTTTATCGAAGAGATCTTCCTCTAAG
ctcttac putative branch site (score: 718)
aaataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagagtactgtgtgctactttaaagatacattgtgttgttgctccaattctcttacatacctttgttcatgtgaccaaataatgcagATATATTGCTGTTGAATTTGCTTCTATCTGGAGGGGGATGGGTGCTGAAGTAGATTTGTTTTATCGAAGAGATCTTCCTCTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC