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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtcatgttactgtcttattatgatagaactaatgtgggtatccaaaatggttctgaagtggctatcatggaatctaaggacacacttgccttgattgtagattgtatgtgaactgtagttttgttacaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGGAAAACGCTATTGGAAAATAAG

Basic information

species Zea mays
transcript GRMZM5G806449_T03
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G806449_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os02g56850.4 (Oryza sativa), 3'ss of exon 1
gttagtcatgttactgtcttattatgatagaactaatgtgggtatccaaaatggttctgaagtggctatcatggaatctaaggacacacttgccttgattgtagattgtatgtgaactgtagttttgttacaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGGAAAACGCTATTGGAAAATAAG
                               || ||       ||  |   || ||      | |  |  |      || | |   || |   || |  ||   ||||     ||| ||    | |  ||  | |||||||| | ||||||||||||||||| || || || || ||||||||||| ||||||| |||  |||||||||||
-------------------------------acaaactatttcatttagcttgcttgcatctttgtgagtacatgtactgaagtgtcatt---ctggggtgcttattg-----gaattgctactgttgtatgattgcagGATGCAAAGAATTTTGGGTGGGAAATCAATGGGGACATTAACTTCAACTGGAAAAGGCTGCTGGAAAATAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211339791|gb|FK980807.1|FK980807
EST:     TACCTAAAAAGATACTCGTGTATGGTGCATCATTCTGTGGAGAATTTGAG                         GATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
genomic: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
EST: gi|94477026|gb|EB705984.1|EB705984
EST:     TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAG                         GATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
genomic: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
EST: gi|91056622|gb|EB167040.1|EB167040
EST:     TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAG                         GATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
genomic: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
EST: gi|149099075|gb|EE185096.2|EE185096
EST:     TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAG                         GATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
genomic: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
EST: gi|71436532|gb|DR817582.1|DR817582
EST:     TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAG                         GATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
genomic: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
EST: gi|211341005|gb|FL266234.1|FL266234
EST:     TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAG                         GATTCGAT-AATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
genomic: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
EST: gi|44682235|gb|CK787283.1|CK787283
EST:     TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAG                         GATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
genomic: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
EST: gi|31611942|gb|CD568564.1|CD568564
EST:     TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAG                         GATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
genomic: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
EST: gi|148994377|gb|EE034060.2|EE034060
EST:     TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAG                         GATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
genomic: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
EST: gi|148943405|gb|EC888464.2|EC888464
EST:     TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAG                         GATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
genomic: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
EST: gi|211337407|gb|FK980805.1|FK980805
EST:     TACCTAAAAAGATACTCGTGTATGGTGCATCATTCTGGGGAAAATTTGAG                         GATTCGAAAAATTTT
genomic: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTT
EST: gi|31664370|gb|CD573095.1|CD573095
EST:     TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAG                         GATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
genomic: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
EST: gi|211339796|gb|FK980812.1|FK980812
EST:     TACCTAAAAAGATACTCGTGTATGGTGCATCATTCTGTGGAGAATTTGAG                         GATTCGAAGAATTTTGGGTGGGAGA
genomic: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTTGGGTGGGAGA
EST: gi|56382419|gb|CV985088.1|CV985088
EST:     TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAG                         GATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
genomic: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
EST: gi|211426649|gb|FL071977.1|FL071977
EST:     TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGGGAATTTGAG                         GATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
genomic: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
EST: gi|149014256|gb|EE043820.2|EE043820
EST:     TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAG                         GATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
genomic: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
EST: gi|111991059|gb|EE331961.1|EE331961
EST:     TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAG                         GATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAAATTG
genomic: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAA-TTG
EST: gi|24934176|gb|CA452394.1|CA452394
EST:     ACCTAAAAAGAT-CTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAG                         GATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
genomic: ACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
EST: gi|31405875|gb|CD484607.1|CD484607
EST:     TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAG                         GATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
genomic: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
EST: gi|33942302|gb|CF348902.1|CF348902
EST:     TACCTAAAAAGATACTCGCGTATGGTGCATCATTCCGTGGAGAATTTGAG                         GATTCGAAGAATTTTGGGGTGGGAGATTAACGGAGATATTA
genomic: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTTGGG-TGGGAGATTAACGGAGATATTA
EST: gi|29577206|gb|CB617318.1|CB617318
EST:     TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAG                         GATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
genomic: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
EST: gi|30306583|gb|CD001256.1|CD001256
EST:     TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAG                         GATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
genomic: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
EST: gi|24934507|gb|CA452725.1|CA452725
EST:     CTCGTGTATGGTGCATCATTCCGTGGAGAATNTGAG                         GATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
genomic: CTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
EST: gi|211426648|gb|FL071976.1|FL071976
EST:     ATCATTCCGTGGAGAATTTGAG                         GATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
genomic: ATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
EST: gi|148937231|gb|EC881413.2|EC881413
EST:     TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAG                         GATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
genomic: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
EST: gi|149084822|gb|EE174326.2|EE174326
EST:     TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAG                         GATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
genomic: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
EST: gi|149077608|gb|EE166308.2|EE166308
EST:     TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAG                         GATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
genomic: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
EST: gi|149074405|gb|EE162793.2|EE162793
EST:     TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAG                         GATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
genomic: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
EST: gi|28910264|gb|CB331352.1|CB331352
EST:     TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAG                         GATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
genomic: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
EST: gi|211337397|gb|FK980795.1|FK980795
EST:     TACCTAAAAAGATACTCGTGTATGGTGCATCATTCTGTGGAGAATTTGAG                         GATTCGAAGAAATTTGGGTGGGAGATTAACGGAGATATT
genomic: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATT
EST: gi|40485831|gb|CK394761.1|CK394761
EST:     TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAG                         GATTCGAAGAATTTTGGGTGGGAGATTAACGGAAAATATTAACTTCAATTG
genomic: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGA-TATTAACTTCAATTG
EST: gi|76293305|gb|DV032873.1|DV032873
EST:     TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAG                         GATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
genomic: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
EST: gi|71311904|gb|DR792431.1|DR792431
EST:     TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAG                         GATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
genomic: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
EST: gi|149089937|gb|EE179225.2|EE179225
EST:     TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAG                         GATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
genomic: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
EST: gi|148969995|gb|EE020910.2|EE020910
EST:     TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAG                         GATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
genomic: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
EST: gi|44682244|gb|CK787292.1|CK787292
EST:     TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAG                         GATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
genomic: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
EST: gi|149108741|gb|EE292941.2|EE292941
EST:     TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAG                         GATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
genomic: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
EST: gi|47962001|gb|CN844710.1|CN844710
EST:     TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAG                         GATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
genomic: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
EST: gi|32938226|gb|CF043045.1|CF043045
EST:     ACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAG                         GATTCGAAGAATTTTGGGTGGGAGATTAACGGAGGTATTATTTTCAATTGG
genomic: ACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
EST: gi|31611973|gb|CD568595.1|CD568595
EST:     TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAG                         GATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
genomic: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
EST: gi|44681912|gb|CK786960.1|CK786960
EST:     TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAG                         GATTCGAAGAATTTTGGGTGGGGAGATTAACGGAGATATTAACTTCAATTG
genomic: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTTGGGTGGG-AGATTAACGGAGATATTAACTTCAATTG
EST: gi|148960879|gb|EE011558.2|EE011558
EST:     TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAG                         GATTCGAAGAATTTGGGGTGGG
genomic: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTTGGGTGGG
EST: gi|76012767|gb|DT939937.1|DT939937
EST:     TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAG                         GATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
genomic: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
EST: gi|33942501|gb|CF349101.1|CF349101
EST:     TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAG                         GATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
genomic: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
EST: gi|211337405|gb|FK980803.1|FK980803
EST:     TACCTAAAAAGATACTCGTGTATGGTGCATCATTCTGTGGAGAATTTGAG                         GATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
genomic: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
EST: gi|44681887|gb|CK786935.1|CK786935
EST:     TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAG                         GATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
genomic: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
EST: gi|24934516|gb|CA452734.1|CA452734
EST:     ACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAG                         GATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
genomic: ACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
EST: gi|211337400|gb|FK980798.1|FK980798
EST:     TACCTAAAAAGATACTCGTGTATGGTGCATCATTCTGTGGAGAATTTGAG                         GATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
genomic: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 368

TTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGGAAAACGCTATTGGAAAATAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 3091

TTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGGAAAACGCTATTGGAAAATAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1821

TTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGGAAAACGCTATTGGAAAATAAG


Block sizes: 46 (upstream exon), 49 (downstream exon)
Score: 418

TTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGGAAAACGCTATTGGAAAATAAG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacacttgccttgattgtagattgtatgtgaactgtagttttgttacaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGGAAAACGCTATTGGAAAATAAG
        ccttgat  putative branch site (score: 418)
                                      ttttgtta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttagtcatgttactgtcttattatgatagaactaatgtgggtatccaaaatggttctgaagtggctatcatggaatctaaggacacacttgccttgattgtagattgtatgtgaactgtagttttgttacaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGGAAAACGCTATTGGAAAATAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT