1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GGCGCACACCAAACTCCCAGAGACTGAACTTGCAAGCTGCAGGCGTTGAGATTGACCGGGTTGGAGCCATCAAGgttatcttttctttcttccctagctttctcttctttgcctgtggggcgtatttacacctgtccaccgataaatctgattgagattgtattgggaagttgaatttatcactaacacaagtttcagtttattttgagtaatttaaatgtttgtttcaatgttgtctatttag
species | Zea mays |
transcript | GRMZM5G806449_T03 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: TGAACTTGCAAGCTGCAGGCGTTGAGATTGACCGGGTTGGAGCCATCAAG GTTGACGA-TATTCEST: gi|211287654|gb|FL367858.1|FL367858
genomic: TGAACTTGCAAGCTGCAGGCGTTGAGATTGACCGGGTTGGAGCCATCAAGgttatctttt ... gtctatttagGTTGACGAATATTC
EST: TGAACTTGCAAGCTGCAGGCGTTGAGATTGACCGGGTTGGAGCCATCAAG GTTGACGAATATTCTCGTACTTCTGCTCCTAGTGTATGGGCTGTGGGTGATEST: gi|76293304|gb|DV032872.1|DV032872
genomic: TGAACTTGCAAGCTGCAGGCGTTGAGATTGACCGGGTTGGAGCCATCAAGgttatctttt ... gtctatttagGTTGACGAATATTCTCGTACTTCTGCTCCTAGTGTATGGGCTGTGGGTGAT
EST: TGAACTTGCAAGCTGCAGGCGTTGAGATTGACCGGGTTGGAGCCATCAAG GTTGACGAATATTCTCGTACTTCTGCTCCTAGTGTATGGGCTGTGGGTGATEST: gi|211368053|gb|FL471715.1|FL471715
genomic: TGAACTTGCAAGCTGCAGGCGTTGAGATTGACCGGGTTGGAGCCATCAAGgttatctttt ... gtctatttagGTTGACGAATATTCTCGTACTTCTGCTCCTAGTGTATGGGCTGTGGGTGAT
EST: CGTTGAGATTGA-CGGG-TGGAGCCCATCAAG GTTGACGAATATCCTCGTACTTCTGCTCCTAGTGTATGGGCTGTGGGTGAEST: gi|62550294|gb|DN830714.1|DN830714
genomic: CGTTGAGATTGACCGGGTTGGAG-CCATCAAGgttatctttt ... gtctatttagGTTGACGAATATTCTCGTACTTCTGCTCCTAGTGTATGGGCTGTGGGTGA
EST: TGAACTTGCAAGCTGCAGGCGTTGAGATTGACCGGGTTGGAGCCATCAAG GTTGACGAATATTCTCGTACTTCTGCTCCTAGTGTATGGGCTGTGGGTGATEST: gi|67018787|gb|CO447536.1|CO447536
genomic: TGAACTTGCAAGCTGCAGGCGTTGAGATTGACCGGGTTGGAGCCATCAAGgttatctttt ... gtctatttagGTTGACGAATATTCTCGTACTTCTGCTCCTAGTGTATGGGCTGTGGGTGAT
EST: TGAACTTGCAAGCTGCAGGCGTTGAGATTGACCGGGTTGGAGCCATCAAG GTTGACGAATATTCTCGTACTTCTGCTCCTAGTGTATGGGCTGTGGGTGATEST: gi|8368856|gb|BE051801.1|BE051801
genomic: TGAACTTGCAAGCTGCAGGCGTTGAGATTGACCGGGTTGGAGCCATCAAGgttatctttt ... gtctatttagGTTGACGAATATTCTCGTACTTCTGCTCCTAGTGTATGGGCTGTGGGTGAT
EST: TGAACTTGCAAGCTGCAGGCGTTGAGATTGACCGGGTTGGAGCCATCAAG GTTGACGAATATTCTCGTACTTCTGCTCCTAGTGTATGGGCTGTGGGTGATEST: gi|211462691|gb|FL336836.1|FL336836
genomic: TGAACTTGCAAGCTGCAGGCGTTGAGATTGACCGGGTTGGAGCCATCAAGgttatctttt ... gtctatttagGTTGACGAATATTCTCGTACTTCTGCTCCTAGTGTATGGGCTGTGGGTGAT
EST: TGAACTTGCAAGCTGCAGGCGTTGAGATTGACCGGGTTGGAGCCATCAAG GTTGACGAATATTCTCGTACTTCTGCTCCTAGTGTATGGGCTGTGGGTGATEST: gi|211123447|gb|FL321141.1|FL321141
genomic: TGAACTTGCAAGCTGCAGGCGTTGAGATTGACCGGGTTGGAGCCATCAAGgttatctttt ... gtctatttagGTTGACGAATATTCTCGTACTTCTGCTCCTAGTGTATGGGCTGTGGGTGAT
EST: TGAACTTGCAAGCTGCAGGCGTTGAGATTGACCGGGTTGGAGCCATCAAG GTTGACGAATATTCTCGTACTTCTGCTCCTAGTGTATGGGCTGTGGGTGATEST: gi|67026810|gb|CO455559.1|CO455559
genomic: TGAACTTGCAAGCTGCAGGCGTTGAGATTGACCGGGTTGGAGCCATCAAGgttatctttt ... gtctatttagGTTGACGAATATTCTCGTACTTCTGCTCCTAGTGTATGGGCTGTGGGTGAT
EST: TGAACTTGCAAGCTGCAGGCGTTGAGATTGACCGGGTTGGAGCCATCAAG GTTGACGAATATTCTCGTACTTCTGCTCCTAGTGTATGGGCTGTGGGTGATEST: gi|76012766|gb|DT939936.1|DT939936
genomic: TGAACTTGCAAGCTGCAGGCGTTGAGATTGACCGGGTTGGAGCCATCAAGgttatctttt ... gtctatttagGTTGACGAATATTCTCGTACTTCTGCTCCTAGTGTATGGGCTGTGGGTGAT
EST: TGACCGGGTTGGAGCCATCAAG GTTGACGAATATTCTCGTACTTCTGCTCCTAGTGTATGGGCTGTGGGTGATEST: gi|211135367|gb|FL349825.1|FL349825
genomic: TGACCGGGTTGGAGCCATCAAGgttatctttt ... gtctatttagGTTGACGAATATTCTCGTACTTCTGCTCCTAGTGTATGGGCTGTGGGTGAT
EST: TGAACTTGCAAGCTGCAGGCGTTGAGATTGACCGGGTTGGAGCCATCAAG GTTGACGAATATTCTCGTACTTCTGCTCCTAGTGTATGGGCTGTGGGTGATEST: gi|32919439|gb|CF024251.1|CF024251
genomic: TGAACTTGCAAGCTGCAGGCGTTGAGATTGACCGGGTTGGAGCCATCAAGgttatctttt ... gtctatttagGTTGACGAATATTCTCGTACTTCTGCTCCTAGTGTATGGGCTGTGGGTGAT
EST: TGAACTTGCAAGCTGCAGGCGTTGAGATTGACCGGGTTGGAGCCATCAAG GTTGACGAATATTCTCGTACTTCTGCTCCTAGTGTATGGGCTGTGGGTGATEST: gi|32794339|gb|CD946575.1|CD946575
genomic: TGAACTTGCAAGCTGCAGGCGTTGAGATTGACCGGGTTGGAGCCATCAAGgttatctttt ... gtctatttagGTTGACGAATATTCTCGTACTTCTGCTCCTAGTGTATGGGCTGTGGGTGAT
EST: TGAACTTGCAAGCTGCAGGCGTTGAGATTGACCGGGTTGGAGCCATCAAG GTTGACGAATATTCTCGTACTTCTGCTCCTAGTGTATGGGCTGTGGGTGATEST: gi|91056621|gb|EB167039.1|EB167039
genomic: TGAACTTGCAAGCTGCAGGCGTTGAGATTGACCGGGTTGGAGCCATCAAGgttatctttt ... gtctatttagGTTGACGAATATTCTCGTACTTCTGCTCCTAGTGTATGGGCTGTGGGTGAT
EST: TGAACTTGCAAGCTGCAGGCGTTGAGATTGACCGGGTTGGAGCCATCAAG GTTGACGAATATTCTCGTACTTCTGCTCCTAGTGTATGGGCTGTGGGTGATEST: gi|24934507|gb|CA452725.1|CA452725
genomic: TGAACTTGCAAGCTGCAGGCGTTGAGATTGACCGGGTTGGAGCCATCAAGgttatctttt ... gtctatttagGTTGACGAATATTCTCGTACTTCTGCTCCTAGTGTATGGGCTGTGGGTGAT
EST: TGAACTTGCAAGCTGCAGGCGTTGAGATTGACCGGGTTGGAGCCATCAAG GTTGACGAATATTCTCGTEST: gi|211396212|gb|FL320934.1|FL320934
genomic: TGAACTTGCAAGCTGCAGGCGTTGAGATTGACCGGGTTGGAGCCATCAAGgttatctttt ... gtctatttagGTTGACGAATATTCTCGT
EST: TGAACTTGCAAGCTGCAGGCGTTGAGATTGACCGGGTTGGAGCCATCAAG GTTGACGAATATTCTCGTACTTCTGCTCCTAGTGTATGGGCTGTGGGTGATEST: gi|47961736|gb|CN844445.1|CN844445
genomic: TGAACTTGCAAGCTGCAGGCGTTGAGATTGACCGGGTTGGAGCCATCAAGgttatctttt ... gtctatttagGTTGACGAATATTCTCGTACTTCTGCTCCTAGTGTATGGGCTGTGGGTGAT
EST: TGAACTTGCAAGCTGCAGGCGTTGAGATTGACCGGGTTGGAGCCATCAAG GTTGACGAATATTCTCGTACTTCTGCTCCTAGTGTATGGGCTGTGGGTGATEST: gi|211460047|gb|FL333663.1|FL333663
genomic: TGAACTTGCAAGCTGCAGGCGTTGAGATTGACCGGGTTGGAGCCATCAAGgttatctttt ... gtctatttagGTTGACGAATATTCTCGTACTTCTGCTCCTAGTGTATGGGCTGTGGGTGAT
EST: TGAACTTGCAAGCTGCAGGCGTTGAGATTGACCGGGTTGGAGCCATCAAG GTTGACGAATATTCTCGTACTTCTGCTCCTAGTGTATGGGCTGTGGGTGATEST: gi|51593048|gb|CV072194.1|CV072194
genomic: TGAACTTGCAAGCTGCAGGCGTTGAGATTGACCGGGTTGGAGCCATCAAGgttatctttt ... gtctatttagGTTGACGAATATTCTCGTACTTCTGCTCCTAGTGTATGGGCTGTGGGTGAT
EST: TGAACTTGCAAGCTGCAGGCGTTGAGATTGACCGGGTTGGAGCCATCAAG GTTGACGAATATTCTCGTACTTCTGCTCCTAGTGTATGGGCTGTGGGTGATEST: gi|47962782|gb|CN845491.1|CN845491
genomic: TGAACTTGCAAGCTGCAGGCGTTGAGATTGACCGGGTTGGAGCCATCAAGgttatctttt ... gtctatttagGTTGACGAATATTCTCGTACTTCTGCTCCTAGTGTATGGGCTGTGGGTGAT
EST: TGAACTTGCAAGCTGCAGGCGTTGAGATTGACCGGGTTGGAGCCATCAAG GTTGACGAATATTCTCGTACTTCTGCTCCTAGTGTATGGGCCGTGGGTGATEST: gi|33942527|gb|CF349127.1|CF349127
genomic: TGAACTTGCAAGCTGCAGGCGTTGAGATTGACCGGGTTGGAGCCATCAAGgttatctttt ... gtctatttagGTTGACGAATATTCTCGTACTTCTGCTCCTAGTGTATGGGCTGTGGGTGAT
EST: TGAACTTGCAAGCTGCAGGCGTTGAGATTGACCGGGTTGGAGCCATCAAG GTTGACGAATATTCTCGTACTTCTGCTCCTAEST: gi|211540781|gb|FL336428.1|FL336428
genomic: TGAACTTGCAAGCTGCAGGCGTTGAGATTGACCGGGTTGGAGCCATCAAGgttatctttt ... gtctatttagGTTGACGAATATTCTCGTACTTCTGCTCCTA
EST: TGAACTTGCAAGCTGCAGGCGTTGAGATTGACCGGGTTGGAGCCATCAAG GTTGACGAATATTCTCGTACTTCTGCTCCTAGTGTATGGGCTGTGGGTGATEST: gi|71311903|gb|DR792430.1|DR792430
genomic: TGAACTTGCAAGCTGCAGGCGTTGAGATTGACCGGGTTGGAGCCATCAAGgttatctttt ... gtctatttagGTTGACGAATATTCTCGTACTTCTGCTCCTAGTGTATGGGCTGTGGGTGAT
EST: AGGCGTTGAGA-TGACCCGGGTTGGAGCCATCAAG GTTGACGAATATTCTCGTACTTCTGCTCCTAGTGTATGGGCTGTGGGTGATEST: gi|108823920|gb|EC277928.1|EC277928
genomic: AGGCGTTGAGATTGA-CCGGGTTGGAGCCATCAAGgttatctttt ... gtctatttagGTTGACGAATATTCTCGTACTTCTGCTCCTAGTGTATGGGCTGTGGGTGAT
EST: TGAACTTGCAAGCTGCAGGCGTTGAGATTGACCGGGTTGGAGCCATCAAG GTTGACGAATATTCTCGTACTTCTGCTCCTAGTGTATGGGCCGTGGGTGATEST: gi|148937230|gb|EC881412.2|EC881412
genomic: TGAACTTGCAAGCTGCAGGCGTTGAGATTGACCGGGTTGGAGCCATCAAGgttatctttt ... gtctatttagGTTGACGAATATTCTCGTACTTCTGCTCCTAGTGTATGGGCTGTGGGTGAT
EST: TGAACTTGCAAGCTGCAGGCGTTGAGATTGACCGGGTTGGAGCCATCAAG GTTGACGAATATTCTCGTACTTCTGCTCCTAGTGTATGGGCTGTGGGTGATEST: gi|211318389|gb|FL341246.1|FL341246
genomic: TGAACTTGCAAGCTGCAGGCGTTGAGATTGACCGGGTTGGAGCCATCAAGgttatctttt ... gtctatttagGTTGACGAATATTCTCGTACTTCTGCTCCTAGTGTATGGGCTGTGGGTGAT
EST: TGAACTTGCAAGCTGCAGGCGTTGAGATTGACCGGGTTGGAGCCATCAAG GTTGACGAATATTCTCGTACTTCTGCTCCTAGTGTATGGGCTGTGGGTGAT
genomic: TGAACTTGCAAGCTGCAGGCGTTGAGATTGACCGGGTTGGAGCCATCAAGgttatctttt ... gtctatttagGTTGACGAATATTCTCGTACTTCTGCTCCTAGTGTATGGGCTGTGGGTGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCGCACACCAAACTCCCAGAGACTGAACTTGCAAGCTGCAGGCGTTGAGATTGACCGGGTTGGAGCCATCAAGgttatcttttctttcttccctagctttctcttctttgcctgtggggcgtatttacacctgtccaccgataaatctgattgagattgtattgggaagttgaatttatcactaacacaagtttcagtttattttgagtaatttaaatgtttgtttcaatgttgtctatttag
- - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG