1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtatgttcgtctaaagagacctcttgaagtaaagcagctgctgatatcttttcgcctaatggtgtattatgcttctgttggcttttcagGTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTGACGAGGCGCTTGAGCCCGACATCCAAGCCAAAGACGAACTTGTAAGCAA
species | Zea mays |
transcript | GRMZM5G806449_T03 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACT GTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTGEST: gi|76293304|gb|DV032872.1|DV032872
genomic: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACTgtatgttcgt ... ggcttttcagGTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTG
EST: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACT GTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTGEST: gi|19350946|gb|BM895478.1|BM895478
genomic: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACTgtatgttcgt ... ggcttttcagGTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTG
EST: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACT GTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTGEST: gi|37378953|gb|CF626201.1|CF626201
genomic: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACTgtatgttcgt ... ggcttttcagGTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTG
EST: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACT GTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTGEST: gi|211368053|gb|FL471715.1|FL471715
genomic: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACTgtatgttcgt ... ggcttttcagGTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTG
EST: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACT GTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTGEST: gi|62550294|gb|DN830714.1|DN830714
genomic: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACTgtatgttcgt ... ggcttttcagGTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTG
EST: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACT GTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGAC-ATGCGCACCGTGEST: gi|67018787|gb|CO447536.1|CO447536
genomic: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACTgtatgttcgt ... ggcttttcagGTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTG
EST: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACT GTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTGEST: gi|47961792|gb|CN844501.1|CN844501
genomic: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACTgtatgttcgt ... ggcttttcagGTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTG
EST: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACT GTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTGEST: gi|58030045|gb|CX725472.1|CX725472
genomic: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACTgtatgttcgt ... ggcttttcagGTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTG
EST: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACT GTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTGEST: gi|33102541|gb|CF062501.1|CF062501
genomic: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACTgtatgttcgt ... ggcttttcagGTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTG
EST: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACT GTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTGEST: gi|37380707|gb|CF627182.1|CF627182
genomic: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACTgtatgttcgt ... ggcttttcagGTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTG
EST: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACT GTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTGEST: gi|14646262|gb|BI180451.1|BI180451
genomic: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACTgtatgttcgt ... ggcttttcagGTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTG
EST: TCGCTATTGCGGTAAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACT GTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTGEST: gi|37395251|gb|CF634905.1|CF634905
genomic: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACTgtatgttcgt ... ggcttttcagGTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTG
EST: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACT GTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTGEST: gi|71757895|gb|DR955832.1|DR955832
genomic: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACTgtatgttcgt ... ggcttttcagGTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTG
EST: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACT GTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCCCCGTGEST: gi|76012766|gb|DT939936.1|DT939936
genomic: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACTgtatgttcgt ... ggcttttcagGTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTG
EST: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACT GTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTGEST: gi|16916633|gb|BM072928.1|BM072928
genomic: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACTgtatgttcgt ... ggcttttcagGTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTG
EST: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACT GTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTGEST: gi|110942635|gb|EE162792.1|EE162792
genomic: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACTgtatgttcgt ... ggcttttcagGTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTG
EST: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACT GTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTGEST: gi|31405874|gb|CD484606.1|CD484606
genomic: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACTgtatgttcgt ... ggcttttcagGTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTG
EST: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACT GTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTGEST: gi|91056621|gb|EB167039.1|EB167039
genomic: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACTgtatgttcgt ... ggcttttcagGTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTG
EST: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACT GTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTGEST: gi|56382549|gb|CV985218.1|CV985218
genomic: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACTgtatgttcgt ... ggcttttcagGTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTG
EST: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACT GTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTGEST: gi|47961736|gb|CN844445.1|CN844445
genomic: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACTgtatgttcgt ... ggcttttcagGTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTG
EST: CNCTATTGCGGTTAAATGTGGAGCCCCCCAANGCANACTTCGACAGCCCT GNTCGGAATCCNCCCTTEST: gi|71310532|gb|DR791561.1|DR791561
genomic: CGCTATTGCGGTTAAATGTGGAGCCACCAAA-GCAGACTTCGACAGCACTgtatgttcgt ... ggcttttcagG-TCGGAATCCACCCTT
EST: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACT GTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTGEST: gi|37381448|gb|CF627611.1|CF627611
genomic: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACTgtatgttcgt ... ggcttttcagGTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTG
EST: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACT GTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTGEST: gi|6095693|gb|AW120360.1|AW120360
genomic: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACTgtatgttcgt ... ggcttttcagGTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTG
EST: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGGCAGCACT GTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTGEST: gi|67025835|gb|CO454584.1|CO454584
genomic: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACTgtatgttcgt ... ggcttttcagGTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTG
EST: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACT GTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTGEST: gi|31664369|gb|CD573094.1|CD573094
genomic: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACTgtatgttcgt ... ggcttttcagGTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTG
EST: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACT GTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTGEST: gi|37377035|gb|CF625088.1|CF625088
genomic: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACTgtatgttcgt ... ggcttttcagGTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTG
EST: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACT GTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTGEST: gi|14243079|gb|BG840745.2|BG840745
genomic: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACTgtatgttcgt ... ggcttttcagGTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTG
EST: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACT GTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTGEST: gi|47962782|gb|CN845491.1|CN845491
genomic: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACTgtatgttcgt ... ggcttttcagGTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTG
EST: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACT GTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTGEST: gi|16927664|gb|BM080733.1|BM080733
genomic: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACTgtatgttcgt ... ggcttttcagGTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTG
EST: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACT GTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTGEST: gi|31664100|gb|CD573280.1|CD573280
genomic: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACTgtatgttcgt ... ggcttttcagGTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTG
EST: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACT GTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTGEST: gi|5670916|gb|AI932179.1|AI932179
genomic: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACTgtatgttcgt ... ggcttttcagGTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTG
EST: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACT GTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTGEST: gi|30088227|gb|CB886432.1|CB886432
genomic: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACTgtatgttcgt ... ggcttttcagGTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTG
EST: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACT GTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTGEST: gi|31611972|gb|CD568594.1|CD568594
genomic: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACTgtatgttcgt ... ggcttttcagGTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTG
EST: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACT GTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCNCCGTGEST: gi|71311903|gb|DR792430.1|DR792430
genomic: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACTgtatgttcgt ... ggcttttcagGTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTG
EST: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACT GTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTGEST: gi|108823920|gb|EC277928.1|EC277928
genomic: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACTgtatgttcgt ... ggcttttcagGTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTG
EST: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACT GTCGGAATCCACCCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACEST: gi|45847417|gb|CN071360.1|CN071360
genomic: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACTgtatgttcgt ... ggcttttcagGTCGGAATCCACCC-TTCCGCTGCTGAAGAGTTCGTGACCATGCGCAC
EST: TCGCTATTGCGGTAAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACT GTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTGEST: gi|148937230|gb|EC881412.2|EC881412
genomic: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACTgtatgttcgt ... ggcttttcagGTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTG
EST: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACT GTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTGEST: gi|149077607|gb|EE166307.2|EE166307
genomic: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACTgtatgttcgt ... ggcttttcagGTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTG
EST: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACT GTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTGEST: gi|6031612|gb|AI668515.2|AI668515
genomic: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACTgtatgttcgt ... ggcttttcagGTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTG
EST: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACT GTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTG
genomic: TCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACTgtatgttcgt ... ggcttttcagGTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTG
cagctgctgatatcttttcgcctaatggtgtattatgcttctgttggcttttcagGTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTGACGAGGCGCTTGAGCCCGACATCCAAGCCAAAGACGAACTTGTAAGCAA
gcctaat putative branch site (score: 222)
cttttc putative PPT
atatctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttcgtctaaagagacctcttgaagtaaagcagctgctgatatcttttcgcctaatggtgtattatgcttctgttggcttttcagGTCGGAATCCACCCTTCCGCTGCTGAAGAGTTCGTGACCATGCGCACCGTGACGAGGCGCTTGAGCCCGACATCCAAGCCAAAGACGAACTTGTAAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA