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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAAAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAGgtaaagcatatgtacaactatctgggtaatttttctcttcctttgttcgttgttatcttatgattgagctttggcatgatccag

Basic information

species Zea mays
transcript GRMZM5G806449_T03
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G806449_T03 (Zea mays), 5'ss of exon 15
lower sequence: LOC_Os02g56850.4 (Oryza sativa), 5'ss of exon 12
GCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAAAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAGgtaa--agcatatgtacaactatct--------gggtaatttt--tctcttcctttgttcgttgttatcttatgattgagctttggcatgatccag
 || |||||||||||  ||||||||||||| |||||| | || ||||| ||||||||||||||||| |||||||||||||| ||||| || |||||||||||||  |   | |||     ||| |            |||  |    | ||||  | |||  |  ||| ||     |||  ||   |    | |||
ACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAAAGTACTTGGTGCATCAATGTGTGGACCAGATGCACCAGAGATTATCCAGgtaagcaaagtttgtgtgtttatttcacacacaaaaaaatcgtggcattttccagtcttcactagtattttgcacctgactttccaccaattgcag

upper sequence: GRMZM5G806449_T03 (Zea mays), 5'ss of exon 15
lower sequence: Vv05s0051g00870.t01 (Vitis vinifera), 5'ss of exon 16
GCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAAAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAGgta-----aagcatatg-tacaactatctgggtaatttttctcttcctttgttcgttgttatcttatgattgagctttggcatgatccag-----------
 || || |||||||| || ||||| ||  | ||||||||||| || |||||||| ||||| ||||| ||||| || |||||||||||||||||||| ||||||      ||  | || ||||| ||| | | |||    |     | |       | ||||        || |  || ||| || |  |            
ACGGCAAGAGAAGACAATTATGAAGCTTCTTGTTGATGCTGAGACAGACAAAGTTCTTGGGGCATCTATGTGCGGGCCAGACGCACCTGAAATTATGCAGgtacctttgagtttgtgatacaa-tattttgataaccacttctagcataaaaggctagttaatcaccttttaactttaggcttgctgtatttattttatca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19350945|gb|BM895477.1|BM895477
EST:     AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAG                         GGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
genomic: AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAGgtaaagcata ... catgatccagGGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
EST: gi|76293304|gb|DV032872.1|DV032872
EST:     AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAG                         GGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
genomic: AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAGgtaaagcata ... catgatccagGGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
EST: gi|19350946|gb|BM895478.1|BM895478
EST:     AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAG                         GGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
genomic: AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAGgtaaagcata ... catgatccagGGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
EST: gi|37378953|gb|CF626201.1|CF626201
EST:     AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAG                         GGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
genomic: AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAGgtaaagcata ... catgatccagGGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
EST: gi|211368053|gb|FL471715.1|FL471715
EST:     AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAG                         GGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
genomic: AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAGgtaaagcata ... catgatccagGGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
EST: gi|62550294|gb|DN830714.1|DN830714
EST:     AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAG                         GGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
genomic: AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAGgtaaagcata ... catgatccagGGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
EST: gi|67018787|gb|CO447536.1|CO447536
EST:     AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAG                         GGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
genomic: AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAGgtaaagcata ... catgatccagGGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
EST: gi|47961792|gb|CN844501.1|CN844501
EST:     AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAG                         GGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
genomic: AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAGgtaaagcata ... catgatccagGGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
EST: gi|58030045|gb|CX725472.1|CX725472
EST:     AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAG                         GGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
genomic: AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAGgtaaagcata ... catgatccagGGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
EST: gi|33102541|gb|CF062501.1|CF062501
EST:     AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAG                         GGTATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
genomic: AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAGgtaaagcata ... catgatccagGGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
EST: gi|37380707|gb|CF627182.1|CF627182
EST:     AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAG                         GGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
genomic: AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAGgtaaagcata ... catgatccagGGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
EST: gi|14646262|gb|BI180451.1|BI180451
EST:     AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAG                         GGCATCGCTATTGCGGTAAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
genomic: AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAGgtaaagcata ... catgatccagGGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
EST: gi|37395251|gb|CF634905.1|CF634905
EST:     AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAG                         GGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
genomic: AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAGgtaaagcata ... catgatccagGGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
EST: gi|71757895|gb|DR955832.1|DR955832
EST:     AAGTACTTGGTGCATCCATGTGTGGACCAGACGCCCCTGAAATTATCCAG                         GGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
genomic: AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAGgtaaagcata ... catgatccagGGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
EST: gi|76012766|gb|DT939936.1|DT939936
EST:     AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAG                         GGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
genomic: AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAGgtaaagcata ... catgatccagGGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
EST: gi|16916633|gb|BM072928.1|BM072928
EST:     AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAG                         GGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
genomic: AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAGgtaaagcata ... catgatccagGGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
EST: gi|110942635|gb|EE162792.1|EE162792
EST:     AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAG                         GGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
genomic: AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAGgtaaagcata ... catgatccagGGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
EST: gi|31405874|gb|CD484606.1|CD484606
EST:     AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAG                         GGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
genomic: AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAGgtaaagcata ... catgatccagGGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
EST: gi|91056621|gb|EB167039.1|EB167039
EST:     AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAG                         GGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
genomic: AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAGgtaaagcata ... catgatccagGGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
EST: gi|56382549|gb|CV985218.1|CV985218
EST:     AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAG                         GGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
genomic: AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAGgtaaagcata ... catgatccagGGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
EST: gi|47961736|gb|CN844445.1|CN844445
EST:     AGTACTTGGTGCATCCATGTGTGGGACCAGACGCACCTGAAATTATCCAG                         GGNCATCNCTATTGCGGTTAAATGTGGAGCCCCCCAANGCANACTTCGACA
genomic: AGTACTTGGTGCATCCATGTGTGG-ACCAGACGCACCTGAAATTATCCAGgtaaagcata ... catgatccagGG-CATCGCTATTGCGGTTAAATGTGGAGCCACCAAA-GCAGACTTCGACA
EST: gi|71310532|gb|DR791561.1|DR791561
EST:     AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAG                         GGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
genomic: AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAGgtaaagcata ... catgatccagGGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
EST: gi|37381448|gb|CF627611.1|CF627611
EST:     AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAG                         GGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
genomic: AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAGgtaaagcata ... catgatccagGGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
EST: gi|6095693|gb|AW120360.1|AW120360
EST:     AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAG                         GGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGGCAGC
genomic: AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAGgtaaagcata ... catgatccagGGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
EST: gi|67025835|gb|CO454584.1|CO454584
EST:     AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAG                         GGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
genomic: AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAGgtaaagcata ... catgatccagGGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
EST: gi|51593048|gb|CV072194.1|CV072194
EST:     AGTACTTGGTGCATCCATGTGTGGACCAGACGCCCCTGAAAATTATCCAG                         GGCATCGCTATTGCGGTT
genomic: AGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAA-TTATCCAGgtaaagcata ... catgatccagGGCATCGCTATTGCGGTT
EST: gi|31664369|gb|CD573094.1|CD573094
EST:     AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAG                         GGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
genomic: AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAGgtaaagcata ... catgatccagGGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
EST: gi|37377035|gb|CF625088.1|CF625088
EST:     AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAG                         GGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
genomic: AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAGgtaaagcata ... catgatccagGGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
EST: gi|14243079|gb|BG840745.2|BG840745
EST:     AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAG                         GGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
genomic: AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAGgtaaagcata ... catgatccagGGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
EST: gi|47962782|gb|CN845491.1|CN845491
EST:     AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAG                         GGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
genomic: AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAGgtaaagcata ... catgatccagGGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
EST: gi|16927664|gb|BM080733.1|BM080733
EST:     AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAG                         GGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
genomic: AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAGgtaaagcata ... catgatccagGGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
EST: gi|31664100|gb|CD573280.1|CD573280
EST:     AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAG                         GGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
genomic: AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAGgtaaagcata ... catgatccagGGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
EST: gi|5670916|gb|AI932179.1|AI932179
EST:     CTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAG                         GGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
genomic: CTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAGgtaaagcata ... catgatccagGGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
EST: gi|30088227|gb|CB886432.1|CB886432
EST:     AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAG                         GGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
genomic: AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAGgtaaagcata ... catgatccagGGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
EST: gi|31611972|gb|CD568594.1|CD568594
EST:     AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAG                         GGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
genomic: AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAGgtaaagcata ... catgatccagGGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
EST: gi|71311903|gb|DR792430.1|DR792430
EST:     AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAG                         GGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
genomic: AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAGgtaaagcata ... catgatccagGGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
EST: gi|108823920|gb|EC277928.1|EC277928
EST:     AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAG                         GGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
genomic: AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAGgtaaagcata ... catgatccagGGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
EST: gi|45847417|gb|CN071360.1|CN071360
EST:     AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAG                         GGCATCGCTATTGCGGTAAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
genomic: AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAGgtaaagcata ... catgatccagGGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
EST: gi|148937230|gb|EC881412.2|EC881412
EST:     AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAG                         GGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
genomic: AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAGgtaaagcata ... catgatccagGGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
EST: gi|149077607|gb|EE166307.2|EE166307
EST:     AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAG                         GGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
genomic: AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAGgtaaagcata ... catgatccagGGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
EST: gi|6031612|gb|AI668515.2|AI668515
EST:     AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAG                         GGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC
genomic: AAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAGgtaaagcata ... catgatccagGGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 135

GCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAAAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAGgtaaagcata ... catgatccagGGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1367

GCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAAAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAGgtaaagcata ... catgatccagGGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1329

GCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAAAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAGgtaaagcata ... catgatccagGGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 176

GCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAAAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAGgtaaagcata ... catgatccagGGCATCGCTATTGCGGTTAAATGTGGAGCCACCAAAGCAGACTTCGACAGCACT