Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGACgtaagcatctcctagttgttttcgtgcatttctcgtgcttactcaaaacatgcagctattctgcttggtatattaactacattctaaatcgacatgttcataatgattttattattgtcctag

Basic information

species Zea mays
transcript GRMZM5G806449_T03
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G806449_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os02g56850.1 (Oryza sativa), 5'ss of exon 3
GTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGACgtaagcatctcc----tagttgttttcgt--gcatttctc-------gtgcttactcaaaacatgcagctattctgcttg------------gtatattaa------ctacattctaaa-tcgacatgttcataatgattttattattgtcctag
||||||||||| |||||||| ||||| ||||||||||| || |||| |||||| ||||||||||||||||||||| |    || |||| | |||   |||||||         |||||  | |  |  |  | | | ||| ||              | || | |       || ||| |||||  |  |||| |||| ||  |     | |||| ||||
GTTGCGATTTGCGAGCTCCCGTTCCATCCCATCAGCTCGGATTGGCAAGGAGGGCATGGTGGGACgtaagcatctgccgattacttgtctgcgtttacatttctgtcgttgaatgcttgattatgatttaaaccaactctcctcatcccctgggtgagaatgtgagatgttgctgcatcctaaaacccgcatgctcattattgtaca--tgttgtgctag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211339791|gb|FK980807.1|FK980807
EST:     CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGAC                         TTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
genomic: CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGACgtaagcatct ... attgtcctagTTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
EST: gi|211339792|gb|FK980808.1|FK980808
EST:     CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGAC                         TTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
genomic: CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGACgtaagcatct ... attgtcctagTTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
EST: gi|211339790|gb|FK980806.1|FK980806
EST:     CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACMTGGTGGGAC                         TTGCGTGATACGTGGTTGCGTATCTGAAAAGATACTCGT
genomic: CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGACgtaagcatct ... attgtcctagTTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGT
EST: gi|94477026|gb|EB705984.1|EB705984
EST:     CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGAC                         TTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
genomic: CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGACgtaagcatct ... attgtcctagTTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
EST: gi|91056622|gb|EB167040.1|EB167040
EST:     CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGAC                         TTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
genomic: CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGACgtaagcatct ... attgtcctagTTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
EST: gi|149099075|gb|EE185096.2|EE185096
EST:     CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGAC                         TTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
genomic: CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGACgtaagcatct ... attgtcctagTTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
EST: gi|211339794|gb|FK980810.1|FK980810
EST:     CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGAC                         TTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
genomic: CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGACgtaagcatct ... attgtcctagTTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
EST: gi|71436532|gb|DR817582.1|DR817582
EST:     CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGAC                         TTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
genomic: CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGACgtaagcatct ... attgtcctagTTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
EST: gi|211341005|gb|FL266234.1|FL266234
EST:     CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGAC                         TTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
genomic: CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGACgtaagcatct ... attgtcctagTTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
EST: gi|44682235|gb|CK787283.1|CK787283
EST:     CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGAC                         TTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
genomic: CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGACgtaagcatct ... attgtcctagTTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
EST: gi|31611942|gb|CD568564.1|CD568564
EST:     CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGAC                         TTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
genomic: CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGACgtaagcatct ... attgtcctagTTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
EST: gi|148994377|gb|EE034060.2|EE034060
EST:     CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGAC                         TTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
genomic: CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGACgtaagcatct ... attgtcctagTTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
EST: gi|211339793|gb|FK980809.1|FK980809
EST:     CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGAC                         TTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
genomic: CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGACgtaagcatct ... attgtcctagTTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
EST: gi|148943405|gb|EC888464.2|EC888464
EST:     CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGAC                         TTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
genomic: CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGACgtaagcatct ... attgtcctagTTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
EST: gi|211337407|gb|FK980805.1|FK980805
EST:     CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGAC                         TTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
genomic: CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGACgtaagcatct ... attgtcctagTTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
EST: gi|31664370|gb|CD573095.1|CD573095
EST:     CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGAC                         TTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
genomic: CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGACgtaagcatct ... attgtcctagTTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
EST: gi|211339796|gb|FK980812.1|FK980812
EST:     CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGAC                         TTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
genomic: CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGACgtaagcatct ... attgtcctagTTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
EST: gi|56382419|gb|CV985088.1|CV985088
EST:     CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGAC                         TTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
genomic: CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGACgtaagcatct ... attgtcctagTTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
EST: gi|211426649|gb|FL071977.1|FL071977
EST:     CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGAC                         TTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
genomic: CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGACgtaagcatct ... attgtcctagTTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
EST: gi|149014256|gb|EE043820.2|EE043820
EST:     CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGAC                         TTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
genomic: CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGACgtaagcatct ... attgtcctagTTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
EST: gi|111991059|gb|EE331961.1|EE331961
EST:     CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGAC                         TTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
genomic: CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGACgtaagcatct ... attgtcctagTTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
EST: gi|31405875|gb|CD484607.1|CD484607
EST:     CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGAC                         TTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
genomic: CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGACgtaagcatct ... attgtcctagTTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
EST: gi|33942302|gb|CF348902.1|CF348902
EST:     CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGAC                         TTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGCGTATGGTGCATC
genomic: CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGACgtaagcatct ... attgtcctagTTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
EST: gi|29577206|gb|CB617318.1|CB617318
EST:     CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGAC                         TTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
genomic: CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGACgtaagcatct ... attgtcctagTTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
EST: gi|30306583|gb|CD001256.1|CD001256
EST:     CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGAC                         TTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
genomic: CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGACgtaagcatct ... attgtcctagTTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
EST: gi|148937231|gb|EC881413.2|EC881413
EST:     CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGAC                         TTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
genomic: CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGACgtaagcatct ... attgtcctagTTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
EST: gi|149084822|gb|EE174326.2|EE174326
EST:     CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGAC                         TTGCGTGATACGTGGGTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
genomic: CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGACgtaagcatct ... attgtcctagTTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
EST: gi|149077608|gb|EE166308.2|EE166308
EST:     CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGAC                         TTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
genomic: CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGACgtaagcatct ... attgtcctagTTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
EST: gi|149074405|gb|EE162793.2|EE162793
EST:     CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGAC                         TTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
genomic: CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGACgtaagcatct ... attgtcctagTTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
EST: gi|28910264|gb|CB331352.1|CB331352
EST:     TCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATTGGTGGGAC                         TTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCAT
genomic: TCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACA-TGGTGGGACgtaagcatct ... attgtcctagTTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCAT
EST: gi|211337397|gb|FK980795.1|FK980795
EST:     CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGAC                         TTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
genomic: CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGACgtaagcatct ... attgtcctagTTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
EST: gi|40485831|gb|CK394761.1|CK394761
EST:     CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGAC                         TTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
genomic: CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGACgtaagcatct ... attgtcctagTTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
EST: gi|76293305|gb|DV032873.1|DV032873
EST:     CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGAC                         TTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
genomic: CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGACgtaagcatct ... attgtcctagTTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
EST: gi|71311904|gb|DR792431.1|DR792431
EST:     CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGAC                         TTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
genomic: CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGACgtaagcatct ... attgtcctagTTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
EST: gi|149089937|gb|EE179225.2|EE179225
EST:     CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGAC                         TTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
genomic: CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGACgtaagcatct ... attgtcctagTTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
EST: gi|148969995|gb|EE020910.2|EE020910
EST:     CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGAC                         TTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
genomic: CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGACgtaagcatct ... attgtcctagTTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
EST: gi|44682244|gb|CK787292.1|CK787292
EST:     CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGAC                         TTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
genomic: CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGACgtaagcatct ... attgtcctagTTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
EST: gi|149108741|gb|EE292941.2|EE292941
EST:     CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGAC                         TTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
genomic: CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGACgtaagcatct ... attgtcctagTTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
EST: gi|211337398|gb|FK980796.1|FK980796
EST:     CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGAC                         TTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGT
genomic: CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGACgtaagcatct ... attgtcctagTTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGT
EST: gi|47962001|gb|CN844710.1|CN844710
EST:     CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGAC                         TTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
genomic: CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGACgtaagcatct ... attgtcctagTTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
EST: gi|31611973|gb|CD568595.1|CD568595
EST:     CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGAC                         TTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
genomic: CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGACgtaagcatct ... attgtcctagTTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
EST: gi|44681912|gb|CK786960.1|CK786960
EST:     CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGAC                         TTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
genomic: CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGACgtaagcatct ... attgtcctagTTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
EST: gi|148960879|gb|EE011558.2|EE011558
EST:     CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGAC                         TTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
genomic: CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGACgtaagcatct ... attgtcctagTTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
EST: gi|76012767|gb|DT939937.1|DT939937
EST:     CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGAC                         TTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
genomic: CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGACgtaagcatct ... attgtcctagTTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
EST: gi|33942501|gb|CF349101.1|CF349101
EST:     CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGAC                         TTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
genomic: CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGACgtaagcatct ... attgtcctagTTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
EST: gi|33101538|gb|CF061498.1|CF061498
EST:     CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGAC                         TTGCGTGATACGTGGTTGCGTACCT
genomic: CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGACgtaagcatct ... attgtcctagTTGCGTGATACGTGGTTGCGTACCT
EST: gi|211337405|gb|FK980803.1|FK980803
EST:     CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGAC                         TTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
genomic: CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGACgtaagcatct ... attgtcctagTTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
EST: gi|44681887|gb|CK786935.1|CK786935
EST:     CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGAC                         TTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
genomic: CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGACgtaagcatct ... attgtcctagTTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
EST: gi|211337400|gb|FK980798.1|FK980798
EST:     CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGAC                         TTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC
genomic: CTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGACgtaagcatct ... attgtcctagTTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 347

GTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGACgtaagcatct ... attgtcctagTTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 2369

GTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGACgtaagcatct ... attgtcctagTTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1496

GTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGACgtaagcatct ... attgtcctagTTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAG


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 434

GTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGACgtaagcatct ... attgtcctagTTGCGTGATACGTGGTTGCGTACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGACgtaagcatctcctagttgttttcgtgcatttctcgtgcttactcaaaacatgcagctattctgcttggtatattaactacattctaaatcgacatgttcataatgattttattattgtcctag

- - - - - - - - - - - - - - -  TCAGCT
- - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - -  AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG