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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATTTGAATGTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGATgtaatttcttgtcatgccttttgtttccatacatgcatacttcacatatcctattcccttctattcatttgcatttccaacttgctag

Basic information

species Zea mays
transcript GRMZM2G149272_T05
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G149272_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os02g42520.2 (Oryza sativa), 5'ss of exon 8
GTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATTTGAATGTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGATgtaatttcttgtcatgccttttgtttccatacatgcatacttcacatatcctattcccttctattcatttgcatttccaacttgctag
||  | ||  || | ||  ||||||| |  |||||||| ||||| || ||||||||| | |||||||| || |||||||| |||||||||||||||||||||| |  ||   | ||   || |  ||||     || |    |  ||   |   || | |||  |    |||    |||  |||
GTGGTGAAGCGGCTGACCAATGGAGGTGCAGATTACTCTTTTGAGTGCGTGGGTGATACAGGAGTAGTGTCGACTGCACTGCAATCATGTTCTGATgtaatttttattc---ctttccattgcactacaattccacctattctgcccagatatattatcttc--tcatgttttggtcttcttag

upper sequence: GRMZM2G149272_T02 (Zea mays), 5'ss of exon 8
lower sequence: Vv16s0039g00320.t01 (Vitis vinifera), 5'ss of exon 8
GTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATTTGAATGTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGATgtaatttct-----tgtcatgccttttgtttccatacatgcatacttcacatatcc-tattcccttctattcatttgcatttccaacttgc--tag
||||| |||  ||| |||||||| ||||  |||||||||||||||||| | || ||| ||||| | ||  | |||||| | |||||||||| |||||||| | ||     | ||    |  |  |||  ||  | | |  ||| || | ||  | ||  | | |  |  ||  | |||||   || |  |||
GTAATTAAACAGATGACTGATGGTGGGGCAGATTACTCATTTGAATGTATAGGCGATACTGGAATGGTGACTACTGCATTACAATCATGTTGTGATgtaagtcctgtgactctctgatccatgttttttatgtaaggaagctttacttgtcaatgttgacatgtgctttttgtcttttcctggttcccttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71331902|gb|DR802836.1|DR802836
EST:     GTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGAT                         GGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTG
genomic: GTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGATgtaatttctt ... aacttgctagGGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTG
EST: gi|211510916|gb|FL028116.1|FL028116
EST:     GTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGAT                         GGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTG
genomic: GTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGATgtaatttctt ... aacttgctagGGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTG
EST: gi|6342730|gb|AW165554.1|AW165554
EST:     TCCACTGCACTTCAATCATGTTCTGAT                         GGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTG
genomic: TCCACTGCACTTCAATCATGTTCTGATgtaatttctt ... aacttgctagGGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTG
EST: gi|60401092|gb|DN233899.1|DN233899
EST:     GTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGAT                         GGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTG
genomic: GTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGATgtaatttctt ... aacttgctagGGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTG
EST: gi|14203856|gb|BG837533.1|BG837533
EST:     GTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGAT                         GGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTG
genomic: GTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGATgtaatttctt ... aacttgctagGGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTG
EST: gi|6095609|gb|AW120276.1|AW120276
EST:     GTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGAT                         GGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTG
genomic: GTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGATgtaatttctt ... aacttgctagGGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTG
EST: gi|29945503|gb|CB815672.1|CB815672
EST:     GTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGAT                         GGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTG
genomic: GTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGATgtaatttctt ... aacttgctagGGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTG
EST: gi|5296121|gb|AI782996.1|AI782996
EST:     GTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGAT                         GGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTG
genomic: GTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGATgtaatttctt ... aacttgctagGGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTG
EST: gi|89246725|gb|DY618512.1|DY618512
EST:     GTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGAT                         GGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTG
genomic: GTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGATgtaatttctt ... aacttgctagGGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTG
EST: gi|67012049|gb|CO440798.1|CO440798
EST:     TCATGTTCTGAT                         GGTTGGGGAGTCACTGTAACTCTTGGCTTACCAAAAGGAAAACAAGAAGTG
genomic: TCATGTTCTGATgtaatttctt ... aacttgctagGGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTG
EST: gi|91874802|gb|EB404759.1|EB404759
EST:     GTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGAT                         GGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTG
genomic: GTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGATgtaatttctt ... aacttgctagGGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTG
EST: gi|5847100|gb|AW000179.1|AW000179
EST:     GTGTGGGTGATTCTGGAGTAGTCTCCCCTGCACTTCAATCATGTTCTGAT                         GGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTG
genomic: GTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGATgtaatttctt ... aacttgctagGGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTG
EST: gi|6194720|gb|AW146824.1|AW146824
EST:     GTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGAT                         GGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTG
genomic: GTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGATgtaatttctt ... aacttgctagGGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTG
EST: gi|5895803|gb|AW037049.1|AW037049
EST:     GTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGAT                         GGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAA-CTAGAA-TG
genomic: GTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGATgtaatttctt ... aacttgctagGGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTG
EST: gi|5895869|gb|AW037115.1|AW037115
EST:     GTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGAT                         GGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTG
genomic: GTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGATgtaatttctt ... aacttgctagGGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTG
EST: gi|71769714|gb|DR967651.1|DR967651
EST:     GTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGAT                         GGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTG
genomic: GTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGATgtaatttctt ... aacttgctagGGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTG
EST: gi|211510917|gb|FL028117.1|FL028117
EST:     GTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGAT                         GGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTG
genomic: GTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGATgtaatttctt ... aacttgctagGGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTG
EST: gi|71762504|gb|DR960441.1|DR960441
EST:     GTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGAT                         GGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTG
genomic: GTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGATgtaatttctt ... aacttgctagGGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTG
EST: gi|5901133|gb|AW042233.1|AW042233
EST:     GTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGAT                         GGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGGG
genomic: GTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGATgtaatttctt ... aacttgctagGGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTG
EST: gi|5922168|gb|AW055438.1|AW055438
EST:     GTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGAT                         GGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTG
genomic: GTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGATgtaatttctt ... aacttgctagGGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTG
EST: gi|76016067|gb|DT943237.1|DT943237
EST:     GTGTGGGTGATTCTGGAGTAGTTTCCACTGCACTTCAATCATGTTCTGAT                         GGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTG
genomic: GTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGATgtaatttctt ... aacttgctagGGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTG
EST: gi|211322359|gb|FL445870.1|FL445870
EST:     CACTGCACTTCAATCATGTTCTGAT                         GGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTG
genomic: CACTGCACTTCAATCATGTTCTGATgtaatttctt ... aacttgctagGGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTG
EST: gi|71325642|gb|DR799508.1|DR799508
EST:     GTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGAT                         GGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTG
genomic: GTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGATgtaatttctt ... aacttgctagGGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTG
EST: gi|6020665|gb|AW065698.1|AW065698
EST:     GTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGAT                         GGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTG
genomic: GTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGATgtaatttctt ... aacttgctagGGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTG