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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCACCTACCTCTTCACACCAACTGCCGCCCCTGCTCCGAGAACCAGAATGGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAGgtattagcccgccccgccttgcttcttgcgtagggtttagtggcgagtaaaattggatggcctgcgcgcag

Basic information

species Zea mays
transcript GRMZM2G149272_T05
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211521058|gb|FL044641.1|FL044641
EST:     GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAG                         CGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGG
genomic: GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAGgtattagccc ... ctgcgcgcagCGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGG
EST: gi|211521056|gb|FL044639.1|FL044639
EST:     GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAG                         CGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGG
genomic: GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAGgtattagccc ... ctgcgcgcagCGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGG
EST: gi|211353144|gb|FL044621.1|FL044621
EST:     GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAG                         CGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGG
genomic: GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAGgtattagccc ... ctgcgcgcagCGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGG
EST: gi|211355542|gb|FL044630.1|FL044630
EST:     GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAG                         CGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGG
genomic: GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAGgtattagccc ... ctgcgcgcagCGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGG
EST: gi|211521054|gb|FL044637.1|FL044637
EST:     GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAG                         CGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGG
genomic: GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAGgtattagccc ... ctgcgcgcagCGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGG
EST: gi|211353142|gb|FL044619.1|FL044619
EST:     GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAG                         CGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGG
genomic: GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAGgtattagccc ... ctgcgcgcagCGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGG
EST: gi|211355543|gb|FL044631.1|FL044631
EST:     GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAG                         CGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGG
genomic: GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAGgtattagccc ... ctgcgcgcagCGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGG
EST: gi|211521055|gb|FL044638.1|FL044638
EST:     GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAG                         CGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGG
genomic: GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAGgtattagccc ... ctgcgcgcagCGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGG
EST: gi|211353139|gb|FL044616.1|FL044616
EST:     GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAG                         CGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGG
genomic: GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAGgtattagccc ... ctgcgcgcagCGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGG
EST: gi|211355544|gb|FL044632.1|FL044632
EST:     GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAG                         CGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGG
genomic: GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAGgtattagccc ... ctgcgcgcagCGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGG
EST: gi|211355540|gb|FL044628.1|FL044628
EST:     GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAG                         CGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGG
genomic: GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAGgtattagccc ... ctgcgcgcagCGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGG
EST: gi|211353143|gb|FL044620.1|FL044620
EST:     GGCCGCCGCCGATGCATCTTCGTTGCCTCCGACCGCCATCACCTGCCGAG                         CGGCGGAGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGG
genomic: GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAGgtattagccc ... ctgcgcgcagCGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGG
EST: gi|211355546|gb|FL044634.1|FL044634
EST:     GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAG                         CGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGG
genomic: GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAGgtattagccc ... ctgcgcgcagCGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGG
EST: gi|211521057|gb|FL044640.1|FL044640
EST:     GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAG                         CGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGG
genomic: GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAGgtattagccc ... ctgcgcgcagCGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGG
EST: gi|211355545|gb|FL044633.1|FL044633
EST:     GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAG                         CGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGG
genomic: GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAGgtattagccc ... ctgcgcgcagCGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGG
EST: gi|211355536|gb|FL044624.1|FL044624
EST:     GCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAAG                         CGGCGGTGGCGTGGGGACCGGGCCAGCCACT
genomic: GCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGA-Ggtattagccc ... ctgcgcgcagCGGCGGTGGCGTGGGGACCGGGCCAGCCACT
EST: gi|211355535|gb|FL044623.1|FL044623
EST:     GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAG                         CGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGG
genomic: GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAGgtattagccc ... ctgcgcgcagCGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGG