1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTCGCTCAAGGTGCTAAGCTTCGAGGGGCGTCCAAGATTATAGGAGTTGATACTAATCCTGAGAAGCAAGAAAAGGgtatgctacctgctacgctgtcaagttgtacattctgctatgaaccctctttgtgttaattattttgttcctggtacag
species | Zea mays |
transcript | GRMZM2G149272_T05 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GCGTCCAAGATTATAGGAGTTGATACT-ATCCCTGAGAAGCAAGAAAAGG GGAAATCATTTGGTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACEST: gi|211510916|gb|FL028116.1|FL028116
genomic: GCGTCCAAGATTATAGGAGTTGATACTAAT-CCTGAGAAGCAAGAAAAGGgtatgctacc ... cctggtacagGGAAATCATTTGGTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAAC
EST: GGCGTCCAAGATTATAGGAGTTGATACTAATCCTGAGAAGCAAGAAAAGG GGAAATCATTTGGTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACEST: gi|14203856|gb|BG837533.1|BG837533
genomic: GGCGTCCAAGATTATAGGAGTTGATACTAATCCTGAGAAGCAAGAAAAGGgtatgctacc ... cctggtacagGGAAATCATTTGGTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAAC
EST: GGCGTCCAAGATTATAGGAGTTGATACTAATCCTGAGAAGCAAGAAAAGG GGAAATCATTTGGTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACEST: gi|29945503|gb|CB815672.1|CB815672
genomic: GGCGTCCAAGATTATAGGAGTTGATACTAATCCTGAGAAGCAAGAAAAGGgtatgctacc ... cctggtacagGGAAATCATTTGGTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAAC
EST: GAGAAGCAAGAAAAGG GGAAATCATTTGGTGTCCCGGACTTTATTAACCCAGATGAATTGAGTGAACEST: gi|5296121|gb|AI782996.1|AI782996
genomic: GAGAAGCAAGAAAAGGgtatgctacc ... cctggtacagGGAAATCATTTGGTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAAC
EST: GGCGTCCAAGATTATAGGAGTTGATACTAATCCTGAGAAGCAAGAAAAGG GGAAATCATTTGGTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACEST: gi|89246725|gb|DY618512.1|DY618512
genomic: GGCGTCCAAGATTATAGGAGTTGATACTAATCCTGAGAAGCAAGAAAAGGgtatgctacc ... cctggtacagGGAAATCATTTGGTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAAC
EST: GGCGTCCAAGATTATAGGAGTTGATACTAATCCTGAGAAGCAAGAAAAGG GGAAATCATTTGGTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACEST: gi|6194720|gb|AW146824.1|AW146824
genomic: GGCGTCCAAGATTATAGGAGTTGATACTAATCCTGAGAAGCAAGAAAAGGgtatgctacc ... cctggtacagGGAAATCATTTGGTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAAC
EST: GGCGTCCAAGATTATAGGAGTTGATACTAATCCTGAGAAGCAAGAAAAGG GGAAATCATTTGGTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACEST: gi|5895803|gb|AW037049.1|AW037049
genomic: GGCGTCCAAGATTATAGGAGTTGATACTAATCCTGAGAAGCAAGAAAAGGgtatgctacc ... cctggtacagGGAAATCATTTGGTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAAC
EST: GGCGTCCAAGATTATAGGAGTTGATACTAATCCTGAGAAGCAAGAAAAGG GGAAATCATTTGGTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACEST: gi|5895869|gb|AW037115.1|AW037115
genomic: GGCGTCCAAGATTATAGGAGTTGATACTAATCCTGAGAAGCAAGAAAAGGgtatgctacc ... cctggtacagGGAAATCATTTGGTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAAC
EST: GGCGTCCAAGATTATAGGAGTTGATACTAATCCTGAGAAGCAAGAAAAGG GGAAATCATTTGGTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACEST: gi|211510917|gb|FL028117.1|FL028117
genomic: GGCGTCCAAGATTATAGGAGTTGATACTAATCCTGAGAAGCAAGAAAAGGgtatgctacc ... cctggtacagGGAAATCATTTGGTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAAC
EST: GGCGTCCAAGATTATAGGAGTTGATACTAATCCTGAGAAGCAAGAAAAGG GGAAATCATTTGGTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACEST: gi|76016067|gb|DT943237.1|DT943237
genomic: GGCGTCCAAGATTATAGGAGTTGATACTAATCCTGAGAAGCAAGAAAAGGgtatgctacc ... cctggtacagGGAAATCATTTGGTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAAC
EST: GGCGTCCAAGATTATAGGAGTTGATACTAATCCTGAGAAGCAAGAAAAGG GGAAATCATTTGGTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACEST: gi|71325642|gb|DR799508.1|DR799508
genomic: GGCGTCCAAGATTATAGGAGTTGATACTAATCCTGAGAAGCAAGAAAAGGgtatgctacc ... cctggtacagGGAAATCATTTGGTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAAC
EST: GGCGTCCAAGATTATAGGAGTTGATACTAATCCTGAGAAGCAAGAAAAGG GGAAATCATTTGGTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACEST: gi|6020665|gb|AW065698.1|AW065698
genomic: GGCGTCCAAGATTATAGGAGTTGATACTAATCCTGAGAAGCAAGAAAAGGgtatgctacc ... cctggtacagGGAAATCATTTGGTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAAC
EST: GGCGTCCAAGATTATAGGAGTTGATACTAATCCTGAGAAGCAAGAAAAGG GGAAATCATTTGGTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAAC
genomic: GGCGTCCAAGATTATAGGAGTTGATACTAATCCTGAGAAGCAAGAAAAGGgtatgctacc ... cctggtacagGGAAATCATTTGGTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCGCTCAAGGTGCTAAGCTTCGAGGGGCGTCCAAGATTATAGGAGTTGATACTAATCCTGAGAAGCAAGAAAAGGgtatgctacctgctacgctgtcaagttgtacattctgctatgaaccctctttgtgttaattattttgttcctggtacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA