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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGGAGGTGGAGGTCGCCCCGCCGGGGCCCATGGAGATCCGTGTCAAGGTCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcactacggcggcggggctgcagcctctgcgtttactatggtagcctcctgcttatgcgtagtaatgtatattctccctacttgtttgagaattattttcatatcataattttttttccttag

Basic information

species Zea mays
transcript GRMZM2G149272_T05
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G149272_T05 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g42520.3 (Oryza sativa), 5'ss of exon 2
GGAGGAGGTGGAGGTCGCCCCGCCGGGGCCCATGGAGATCCGTGTCAAGGTCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcactacggcggcggggctgcagcctctgcgtttactatggtagcctcctgcttatgcgtagtaatgtatattctccctacttgtttgagaattattttcatatcataattttttttccttag
||||||||||||||| || ||||||| | ||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||    |||||||||| |||| ||    ||||  |       | || ||  | |  |    | ||  ||||||   |||||   | ||  || ||    ||  ||    || |   |                            
GGAGGAGGTGGAGGTGGCGCCGCCGGAGGCCATGGAGATCCGCGTCAAGGTCGTCTCCACCTCCATCTGCCGCAGTGACGTCACCCAGTGGCAATCCACGgtacgc----cggcctctctagctctgcttc--catccagcccgata--ctcctg---atgcgc--tcatcgattttgctgctgttt--ccgaaacgcag---------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211521058|gb|FL044641.1|FL044641
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAG                         CTGAGAGCCTGAGACAAACGATCTCTCTGATCGAATTTGCTCATCTGTGTT
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... ttttccttagCTGAGAGCCTGAGACAAACGATCTCTCTGATCGAATTTGCTCATCTGTGTT
EST: gi|211521056|gb|FL044639.1|FL044639
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAG                         CTGAGAGCCTGAGACAAACGATCTCTCTGATCGAATTTGCTCATCTGTGTT
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... ttttccttagCTGAGAGCCTGAGACAAACGATCTCTCTGATCGAATTTGCTCATCTGTGTT
EST: gi|211353144|gb|FL044621.1|FL044621
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAG                         CTGAGAGCCTGAGACAAACGATCTCTCTGATCGAATTTGCTCATCTGTGTT
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... ttttccttagCTGAGAGCCTGAGACAAACGATCTCTCTGATCGAATTTGCTCATCTGTGTT
EST: gi|211355542|gb|FL044630.1|FL044630
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAG                         CTGAGAGCCTGAGACAAACGATCTCTCTGATCGAATTTGCTCATCTGTGTT
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... ttttccttagCTGAGAGCCTGAGACAAACGATCTCTCTGATCGAATTTGCTCATCTGTGTT
EST: gi|211521054|gb|FL044637.1|FL044637
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAG                         CTGAGAGCCTGAGACAAACGATCTCTCTGATCGAATTTGCTCATCTGTGTT
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... ttttccttagCTGAGAGCCTGAGACAAACGATCTCTCTGATCGAATTTGCTCATCTGTGTT
EST: gi|211353142|gb|FL044619.1|FL044619
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAG                         CTGAGAGCCTGAGACAAACGATCTCTCTGATCGAATTTGCTCATCTGTGTT
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... ttttccttagCTGAGAGCCTGAGACAAACGATCTCTCTGATCGAATTTGCTCATCTGTGTT
EST: gi|211355543|gb|FL044631.1|FL044631
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAG                         CTGAGAGCCTGAGACAAACGATCTCTCTGATCGAATTTGCTCATCTGTGTT
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... ttttccttagCTGAGAGCCTGAGACAAACGATCTCTCTGATCGAATTTGCTCATCTGTGTT
EST: gi|211521055|gb|FL044638.1|FL044638
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAG                         CTGAGAGCCTGAGACAAACGATCTCTCTGATCGAATTTGCTCATCTGTGTT
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... ttttccttagCTGAGAGCCTGAGACAAACGATCTCTCTGATCGAATTTGCTCATCTGTGTT
EST: gi|211353139|gb|FL044616.1|FL044616
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAG                         CTGAGAGCCTGAGACAAACGATCTCTCTGATCGAATTTGCTCATCTGTGTT
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... ttttccttagCTGAGAGCCTGAGACAAACGATCTCTCTGATCGAATTTGCTCATCTGTGTT
EST: gi|211355544|gb|FL044632.1|FL044632
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAG                         CTGAGAGCCTGAGACAAACGATCTCTCTGATCGAATTTGCTCATCTGTGTT
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... ttttccttagCTGAGAGCCTGAGACAAACGATCTCTCTGATCGAATTTGCTCATCTGTGTT
EST: gi|211355540|gb|FL044628.1|FL044628
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAG                         CTGAGAGCCTGAGACAAACGATCTCTCTGATCGAATTTGCTCATCTGTGTT
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... ttttccttagCTGAGAGCCTGAGACAAACGATCTCTCTGATCGAATTTGCTCATCTGTGTT
EST: gi|211353143|gb|FL044620.1|FL044620
EST:     TCGTCTCCACCTCCGGCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAG                         CTGAGAGCCTGAGACAAACGATCTCTCTGATCGAATTTGCTCATCTGTGGT
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... ttttccttagCTGAGAGCCTGAGACAAACGATCTCTCTGATCGAATTTGCTCATCTGTGTT
EST: gi|211355546|gb|FL044634.1|FL044634
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAG                         CTGAGAGCCTGAGACAAACGATCTCTCTGATCGAATTTGCTCATCTGTGTT
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... ttttccttagCTGAGAGCCTGAGACAAACGATCTCTCTGATCGAATTTGCTCATCTGTGTT
EST: gi|211521057|gb|FL044640.1|FL044640
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAG                         CTGAGAGCCTGAGACAAACGATCTCTCTGATCGAATTTGCTCATCTGTGTT
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... ttttccttagCTGAGAGCCTGAGACAAACGATCTCTCTGATCGAATTTGCTCATCTGTGTT
EST: gi|211355545|gb|FL044633.1|FL044633
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAG                         CTGAGAGCCTGAGACAAACGATCTCTCTGATCGAATTTGCTCATCTGTGTT
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... ttttccttagCTGAGAGCCTGAGACAAACGATCTCTCTGATCGAATTTGCTCATCTGTGTT
EST: gi|211355535|gb|FL044623.1|FL044623
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAG                         CTGAGAGCCTGAGACAAACGATCTCTCTGATCGAATTTGCTCATCTGTGTT
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... ttttccttagCTGAGAGCCTGAGACAAACGATCTCTCTGATCGAATTTGCTCATCTGTGTT