1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TTCAGCGAGTACACGGTTGTCCATTCCGGATGTGCGGTGAAGGTTGGCCTGACCGTGCCAATGGACAGGGTGTGCCTGCTGAGCTGCGGTGTGTCTTCAGgtaaatcctgaggttcagagcttcagatatctgagagtagctgtgttagctcgtctgtttgtaggaacagtgccttagttaccttgcatggttgcacatttttgtggatctgatcatccctctttgttcatggttctatcgttag
species | Zea mays |
transcript | GRMZM2G149272_T05 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GACCGTSCCAATGGACAGGGTGTGCCTGCTGAGCTGCGGTGTGTCTGCAG GACTCGGTGCAGTCTGGAATGTAGCTAATGTATCAAAGGGCTCAAGTGTAGEST: gi|5296121|gb|AI782996.1|AI782996
genomic: GACCGTGCCAATGGACAGGGTGTGCCTGCTGAGCTGCGGTGTGTCTTCAGgtaaatcctg ... ctatcgttagGACTCGGTGCAGTCTGGAATGTAGCTAATGTATCAAAGGGCTCAAGTGTAG
EST: GACCGTGCCAATGGACAGGGTGTGCCTGCTGAGCTGCGGTGTGTCTGCAG GACTCGGTGCAGTCTGGAATGTAGCTAATGTATCAAAGGGCTCAAGTGTAGEST: gi|50322631|gb|CO517757.1|CO517757
genomic: GACCGTGCCAATGGACAGGGTGTGCCTGCTGAGCTGCGGTGTGTCTTCAGgtaaatcctg ... ctatcgttagGACTCGGTGCAGTCTGGAATGTAGCTAATGTATCAAAGGGCTCAAGTGTAG
EST: GACCGTGCCAATGGACAGGGTGTGCCTGCTGAGCTGCGGTGTGTCTTCAG GACTCGGTGCAEST: gi|6194720|gb|AW146824.1|AW146824
genomic: GACCGTGCCAATGGACAGGGTGTGCCTGCTGAGCTGCGGTGTGTCTTCAGgtaaatcctg ... ctatcgttagGACTCGGTGCA
EST: GACCGTGCCAATGGACAGGGTGTGCCTGCTGAGCTGCGGTGTGTCTGCAG GACTCGGTGCAGTCTGGAATGTAGCTAATGTATCAAAGGGCTCAAGTGTAGEST: gi|5895803|gb|AW037049.1|AW037049
genomic: GACCGTGCCAATGGACAGGGTGTGCCTGCTGAGCTGCGGTGTGTCTTCAGgtaaatcctg ... ctatcgttagGACTCGGTGCAGTCTGGAATGTAGCTAATGTATCAAAGGGCTCAAGTGTAG
EST: GACCGTGCCAATGGACAGGGTGTGCCTGCTGAGCTGCGGTGTGTCTGCAG GACTCGGTGCAGTCTGGAATGTAGCTAATGTATCAAAGGGCTCAAGTGTAGEST: gi|5895869|gb|AW037115.1|AW037115
genomic: GACCGTGCCAATGGACAGGGTGTGCCTGCTGAGCTGCGGTGTGTCTTCAGgtaaatcctg ... ctatcgttagGACTCGGTGCAGTCTGGAATGTAGCTAATGTATCAAAGGGCTCAAGTGTAG
EST: GACCGTGCCAATGGACAGGGTGTGCCTGCTGAGCTGCGGTGTGTCTGCAG GACTCGGTGCAGTCTGGAATGTAGCTAATGTATCAAAGGGCTCAAGTGTAGEST: gi|6020665|gb|AW065698.1|AW065698
genomic: GACCGTGCCAATGGACAGGGTGTGCCTGCTGAGCTGCGGTGTGTCTTCAGgtaaatcctg ... ctatcgttagGACTCGGTGCAGTCTGGAATGTAGCTAATGTATCAAAGGGCTCAAGTGTAG
EST: GACCGTGCCAATGGACAGGGTGTTTCTGCTGAGCTGCGGTGTGTCTGCAG GACTCGGTGCAGTCTGGAATGTAGCTAATGTATCAAAGGGCTCAAGTGTAG
genomic: GACCGTGCCAATGGACAGGGTGTGCCTGCTGAGCTGCGGTGTGTCTTCAGgtaaatcctg ... ctatcgttagGACTCGGTGCAGTCTGGAATGTAGCTAATGTATCAAAGGGCTCAAGTGTAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCAGCGAGTACACGGTTGTCCATTCCGGATGTGCGGTGAAGGTTGGCCTGACCGTGCCAATGGACAGGGTGTGCCTGCTGAGCTGCGGTGTGTCTTCAGgtaaatcctgaggttcagagcttcagatatctgagagtagctgtgttagctcgtctgtttgtaggaacagtgccttagttaccttgcatggttgcacatttttgtggatctgatcatccctctttgttcatggttctatcgttag
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