1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgagtatctacataagggtccattataagttaattcttacatatcaagaactgttgtaacgagacctatgtctgctgagttagGTCGCTCAAGGTGCTAAGCTTCGAGGGGCGTCCAAGATTATAGGAGTTGATACTAATCCTGAGAAGCAAGAAAAGG
species | Zea mays |
transcript | GRMZM2G149272_T05 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAAAGGGCTCAAGTGTAGCTATATTTGGTCTTGGGACCGTAGGACTTTCT GTCGCTCAAGGTGCTAAGCTTCGAGGGGCGTCCAAGATTATAGGAGTTGATEST: gi|14203856|gb|BG837533.1|BG837533
genomic: CAAAGGGCTCAAGTGTAGCTATATTTGGTCTTGGGACCGTAGGACTTTCTgtgagtatct ... gctgagttagGTCGCTCAAGGTGCTAAGCTTCGAGGGGCGTCCAAGATTATAGGAGTTGAT
EST: CAAAGGGCTCAAGTGTAGCTATATTTGGTCTTGGGACCGTAGGACTTTCT GTCGCTCAAGGTGCTAAGCTTCGAGGGGCGTCCAAGATTATAGGAGTTGATEST: gi|5296121|gb|AI782996.1|AI782996
genomic: CAAAGGGCTCAAGTGTAGCTATATTTGGTCTTGGGACCGTAGGACTTTCTgtgagtatct ... gctgagttagGTCGCTCAAGGTGCTAAGCTTCGAGGGGCGTCCAAGATTATAGGAGTTGAT
EST: CAAAGGGCTCAAGTGTAGCTATATTTGGTCTTGGGACCGTAGGACTTTCT GTCGCTCAAGGTGCTAAGCTTCGAGGGGCGTCCAAGATTATAGGAGTTGATEST: gi|6194720|gb|AW146824.1|AW146824
genomic: CAAAGGGCTCAAGTGTAGCTATATTTGGTCTTGGGACCGTAGGACTTTCTgtgagtatct ... gctgagttagGTCGCTCAAGGTGCTAAGCTTCGAGGGGCGTCCAAGATTATAGGAGTTGAT
EST: CAAAGGGCTCAAGTGTAGCTATATTTGGTCTTGGGACCGTAGGACTTTCT GTCGCTCAAGGTGCTAAGCTTCGAGGGGCGTCCAAGATTATAGGAGTTGATEST: gi|5895803|gb|AW037049.1|AW037049
genomic: CAAAGGGCTCAAGTGTAGCTATATTTGGTCTTGGGACCGTAGGACTTTCTgtgagtatct ... gctgagttagGTCGCTCAAGGTGCTAAGCTTCGAGGGGCGTCCAAGATTATAGGAGTTGAT
EST: CAAAGGGCTCAAGTGTAGCTATATTTGGTCTTGGGACCGTAGGACTTTCT GTCGCTCAAGGTGCTAAGCTTCGAGGGGCGTCCAAGATTATAGGAGTTGATEST: gi|5895869|gb|AW037115.1|AW037115
genomic: CAAAGGGCTCAAGTGTAGCTATATTTGGTCTTGGGACCGTAGGACTTTCTgtgagtatct ... gctgagttagGTCGCTCAAGGTGCTAAGCTTCGAGGGGCGTCCAAGATTATAGGAGTTGAT
EST: CAAAGGGCTCAAGTGTAGCTATATTTGGTCTTGGGACCGTAGGACTTTCT GTCGCTCAAGGTGCTAAGCTTCGAGGGGCGTCCAAGATTATAGGAGTTGATEST: gi|211510917|gb|FL028117.1|FL028117
genomic: CAAAGGGCTCAAGTGTAGCTATATTTGGTCTTGGGACCGTAGGACTTTCTgtgagtatct ... gctgagttagGTCGCTCAAGGTGCTAAGCTTCGAGGGGCGTCCAAGATTATAGGAGTTGAT
EST: CAAAGGGCTCAAGTGTAGCTATATTTGGTCTTGGGACCGTAGGACTTTCT GTCGCTCAAGGTGCTAAGCTTCGAGGGGCGTCCAAGATTATAGGAGTTGATEST: gi|71325642|gb|DR799508.1|DR799508
genomic: CAAAGGGCTCAAGTGTAGCTATATTTGGTCTTGGGACCGTAGGACTTTCTgtgagtatct ... gctgagttagGTCGCTCAAGGTGCTAAGCTTCGAGGGGCGTCCAAGATTATAGGAGTTGAT
EST: GGACCGTAGGACTTTCT GTCGCTCAAGGTGCTAAGCTTCGAGGGGCGTCCAAGATTATAGGAGTTGATEST: gi|6020665|gb|AW065698.1|AW065698
genomic: GGACCGTAGGACTTTCTgtgagtatct ... gctgagttagGTCGCTCAAGGTGCTAAGCTTCGAGGGGCGTCCAAGATTATAGGAGTTGAT
EST: CAAAGGGCTCAAGTGTAGCTATATTTGGTCTTGGGACCGTAGGACTTTCT GTCGCTCAAGGTGCTAAGCTTCGAGGGGCGTCCAAGATTATAGGAGTTGAT
genomic: CAAAGGGCTCAAGTGTAGCTATATTTGGTCTTGGGACCGTAGGACTTTCTgtgagtatct ... gctgagttagGTCGCTCAAGGTGCTAAGCTTCGAGGGGCGTCCAAGATTATAGGAGTTGAT
gttaattcttacatatcaagaactgttgtaacgagacctatgtctgctgagttagGTCGCTCAAGGTGCTAAGCTTCGAGGGGCGTCCAAGATTATAGGAGTTGATACTAATCCTGAGAAGCAAGAAAAGG
ttgtaac putative branch site (score: 2)
ttacatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtatctacataagggtccattataagttaattcttacatatcaagaactgttgtaacgagacctatgtctgctgagttagGTCGCTCAAGGTGCTAAGCTTCGAGGGGCGTCCAAGATTATAGGAGTTGATACTAATCCTGAGAAGCAAGAAAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA