Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcactacggcggcggggctgcagcctctgcgtttactatggtagcctcctgcttatgcgtagtaatgtatattctccctacttgtttgagaattattttcatatcataattttttttccttagCTGAGAGCCTGAGACAAACGATCTCTCTGATCGAATTTGCTCATCTGTGTTCTCTTCCAATTCCAACATGCAGGCGCAACTTGATCTGTTCCCCAGAGTC

Basic information

species Zea mays
transcript GRMZM2G149272_T05
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211521058|gb|FL044641.1|FL044641
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAG                         CTGAGAGCCTGAGACAAACGATCTCTCTGATCGAATTTGCTCATCTGTGTT
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... ttttccttagCTGAGAGCCTGAGACAAACGATCTCTCTGATCGAATTTGCTCATCTGTGTT
EST: gi|211521056|gb|FL044639.1|FL044639
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAG                         CTGAGAGCCTGAGACAAACGATCTCTCTGATCGAATTTGCTCATCTGTGTT
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... ttttccttagCTGAGAGCCTGAGACAAACGATCTCTCTGATCGAATTTGCTCATCTGTGTT
EST: gi|211353144|gb|FL044621.1|FL044621
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAG                         CTGAGAGCCTGAGACAAACGATCTCTCTGATCGAATTTGCTCATCTGTGTT
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... ttttccttagCTGAGAGCCTGAGACAAACGATCTCTCTGATCGAATTTGCTCATCTGTGTT
EST: gi|211355542|gb|FL044630.1|FL044630
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAG                         CTGAGAGCCTGAGACAAACGATCTCTCTGATCGAATTTGCTCATCTGTGTT
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... ttttccttagCTGAGAGCCTGAGACAAACGATCTCTCTGATCGAATTTGCTCATCTGTGTT
EST: gi|211521054|gb|FL044637.1|FL044637
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAG                         CTGAGAGCCTGAGACAAACGATCTCTCTGATCGAATTTGCTCATCTGTGTT
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... ttttccttagCTGAGAGCCTGAGACAAACGATCTCTCTGATCGAATTTGCTCATCTGTGTT
EST: gi|211353142|gb|FL044619.1|FL044619
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAG                         CTGAGAGCCTGAGACAAACGATCTCTCTGATCGAATTTGCTCATCTGTGTT
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... ttttccttagCTGAGAGCCTGAGACAAACGATCTCTCTGATCGAATTTGCTCATCTGTGTT
EST: gi|211355543|gb|FL044631.1|FL044631
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAG                         CTGAGAGCCTGAGACAAACGATCTCTCTGATCGAATTTGCTCATCTGTGTT
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... ttttccttagCTGAGAGCCTGAGACAAACGATCTCTCTGATCGAATTTGCTCATCTGTGTT
EST: gi|211521055|gb|FL044638.1|FL044638
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAG                         CTGAGAGCCTGAGACAAACGATCTCTCTGATCGAATTTGCTCATCTGTGTT
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... ttttccttagCTGAGAGCCTGAGACAAACGATCTCTCTGATCGAATTTGCTCATCTGTGTT
EST: gi|211353139|gb|FL044616.1|FL044616
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAG                         CTGAGAGCCTGAGACAAACGATCTCTCTGATCGAATTTGCTCATCTGTGTT
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... ttttccttagCTGAGAGCCTGAGACAAACGATCTCTCTGATCGAATTTGCTCATCTGTGTT
EST: gi|211355544|gb|FL044632.1|FL044632
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAG                         CTGAGAGCCTGAGACAAACGATCTCTCTGATCGAATTTGCTCATCTGTGTT
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... ttttccttagCTGAGAGCCTGAGACAAACGATCTCTCTGATCGAATTTGCTCATCTGTGTT
EST: gi|211355540|gb|FL044628.1|FL044628
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAG                         CTGAGAGCCTGAGACAAACGATCTCTCTGATCGAATTTGCTCATCTGTGTT
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... ttttccttagCTGAGAGCCTGAGACAAACGATCTCTCTGATCGAATTTGCTCATCTGTGTT
EST: gi|211353143|gb|FL044620.1|FL044620
EST:     TCGTCTCCACCTCCGGCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAG                         CTGAGAGCCTGAGACAAACGATCTCTCTGATCGAATTTGCTCATCTGTGGT
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... ttttccttagCTGAGAGCCTGAGACAAACGATCTCTCTGATCGAATTTGCTCATCTGTGTT
EST: gi|211355546|gb|FL044634.1|FL044634
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAG                         CTGAGAGCCTGAGACAAACGATCTCTCTGATCGAATTTGCTCATCTGTGTT
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... ttttccttagCTGAGAGCCTGAGACAAACGATCTCTCTGATCGAATTTGCTCATCTGTGTT
EST: gi|211521057|gb|FL044640.1|FL044640
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAG                         CTGAGAGCCTGAGACAAACGATCTCTCTGATCGAATTTGCTCATCTGTGTT
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... ttttccttagCTGAGAGCCTGAGACAAACGATCTCTCTGATCGAATTTGCTCATCTGTGTT
EST: gi|211355545|gb|FL044633.1|FL044633
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAG                         CTGAGAGCCTGAGACAAACGATCTCTCTGATCGAATTTGCTCATCTGTGTT
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... ttttccttagCTGAGAGCCTGAGACAAACGATCTCTCTGATCGAATTTGCTCATCTGTGTT
EST: gi|211355535|gb|FL044623.1|FL044623
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAG                         CTGAGAGCCTGAGACAAACGATCTCTCTGATCGAATTTGCTCATCTGTGTT
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... ttttccttagCTGAGAGCCTGAGACAAACGATCTCTCTGATCGAATTTGCTCATCTGTGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atattctccctacttgtttgagaattattttcatatcataattttttttccttagCTGAGAGCCTGAGACAAACGATCTCTCTGATCGAATTTGCTCATCTGTGTTCTCTTCCAATTCCAACATGCAGGCGCAACTTGATCTGTTCCCCAGAGTC
                                      taattttttttcctt  CT-rich tract
             ttgtttgagaattatt  TA-rich tract