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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAATGTGTTGACACTGCAAATGTCCAAGCCTCCGGCTTTCCGATACAAGAGTGGGCAATATATGTTTGTTCAATGTCCAGCAGTGTCACCCTTTGAATGgtaatttgtactttggcaacaaaaaatgattgaattatgtcgttgcttggatagaaactaccagctttcataaatagtcttgatgaaccccattgagcactgagaatttacattctcttaatag

Basic information

species Zea mays
transcript GRMZM2G138152_T02
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32928792|gb|CF033604.1|CF033604
EST:     GTGTCACCCTTTGAATG                         GCATCCGTTCTCAATTACTTCAGCGCCTGGGGATGATTATCTAAGCATTCA
genomic: GTGTCACCCTTTGAATGgtaatttgta ... ctcttaatagGCATCCGTTCTCAATTACTTCAGCGCCTGGGGATGATTATCTAAGCATTCA
EST: gi|32928557|gb|CF033369.1|CF033369
EST:     AGTGGGCAATATATGTTTGTTCAATGTCCAGCAGTGTCACCCTTTGAATG                         GCATCCGTTCTCAATTACTTCAGCGCCTGGGGATGATTATCTAAGCATTCA
genomic: AGTGGGCAATATATGTTTGTTCAATGTCCAGCAGTGTCACCCTTTGAATGgtaatttgta ... ctcttaatagGCATCCGTTCTCAATTACTTCAGCGCCTGGGGATGATTATCTAAGCATTCA
EST: gi|32929468|gb|CF034280.1|CF034280
EST:     AGTGGGCAATATATGTTTGTTCAATGTCCAGCAGTGTCACCCTTTGAATG                         GCATCCGTTCTCAATTACTTCAGCGCCTGGGGATGATTATCTAAGCATTCA
genomic: AGTGGGCAATATATGTTTGTTCAATGTCCAGCAGTGTCACCCTTTGAATGgtaatttgta ... ctcttaatagGCATCCGTTCTCAATTACTTCAGCGCCTGGGGATGATTATCTAAGCATTCA
EST: gi|76011642|gb|DT938812.1|DT938812
EST:     GGGCAATATATGTTTGTTCAATGTCCAGCAGTGTCACCCTTTGAATG                         GCATCCGTTCTCAATTACTTCAGCGCCTGGGGATGATTATCTAAGCATTCA
genomic: GGGCAATATATGTTTGTTCAATGTCCAGCAGTGTCACCCTTTGAATGgtaatttgta ... ctcttaatagGCATCCGTTCTCAATTACTTCAGCGCCTGGGGATGATTATCTAAGCATTCA
EST: gi|32929691|gb|CF034503.1|CF034503
EST:     AGTGGGCAATATATGTTTGTTCAATGCCCAGCACTGTCACCCTTTGAATG                         GCACCCGTTCTCAATTACTTCAGCGCCTGGGGATGATTATCTAAGCATTCA
genomic: AGTGGGCAATATATGTTTGTTCAATGTCCAGCAGTGTCACCCTTTGAATGgtaatttgta ... ctcttaatagGCATCCGTTCTCAATTACTTCAGCGCCTGGGGATGATTATCTAAGCATTCA
EST: gi|5566901|gb|AI881812.1|AI881812
EST:     AGTGGGCAATATATGTTTGTTCAATGTCCAGCAGTGTCACCCTTTGAATG                         GCATCCGTTCTCAATTACTTCAGCGCCTGGGGATGATTATCTAAGCATTCA
genomic: AGTGGGCAATATATGTTTGTTCAATGTCCAGCAGTGTCACCCTTTGAATGgtaatttgta ... ctcttaatagGCATCCGTTCTCAATTACTTCAGCGCCTGGGGATGATTATCTAAGCATTCA
EST: gi|32929564|gb|CF034376.1|CF034376
EST:     AGTGGGCAATATATGTTTGTTCAATGTCCAGCAGTGTCACCCTTTGAATG                         GCATCCGTTCTCAATTACTTCAGCGCCTGGGGATGATTATCTAAGCATTCA
genomic: AGTGGGCAATATATGTTTGTTCAATGTCCAGCAGTGTCACCCTTTGAATGgtaatttgta ... ctcttaatagGCATCCGTTCTCAATTACTTCAGCGCCTGGGGATGATTATCTAAGCATTCA