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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGGACCACAAACGCTTACTTCTATTGGGTTACACGTGAGCAAGGTTCTTTTGATTGGTTCAAGGGAGTCATGAATGAAATTGCTGAACTGGACCAAAGGgtgcatagtaccaattgaccacttgttttgtttgagttacattttctaattgtcagaattcatatgttcccttaagtgggttttacttacagttgcctttgctccattctag

Basic information

species Zea mays
transcript GRMZM2G138152_T02
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32929250|gb|CF034062.1|CF034062
EST:     TTGATTGGTTCAAGGGAGTCATGAATGAAACTGCTGAACTGGACCAAAGG                         AATATTATTGAGATGCACAACTACCTTACGAGTGTTTATGAGGAAGGAGAT
genomic: TTGATTGGTTCAAGGGAGTCATGAATGAAATTGCTGAACTGGACCAAAGGgtgcatagta ... tccattctagAATATTATTGAGATGCACAACTACCTTACGAGTGTTTATGAGGAAGGAGAT
EST: gi|60339853|gb|DN206826.1|DN206826
EST:     TTGATTGGTTCAAGGGAGTCATGAATGAAATTGCTGAACTGGACCAAAGG                         AATATTATTGAGATGCACAACTACCTTACGAGTGTTTATGAGGAAGGAGAT
genomic: TTGATTGGTTCAAGGGAGTCATGAATGAAATTGCTGAACTGGACCAAAGGgtgcatagta ... tccattctagAATATTATTGAGATGCACAACTACCTTACGAGTGTTTATGAGGAAGGAGAT
EST: gi|6020909|gb|AW065837.1|AW065837
EST:     TTGATTGGTTCAAGGGAGTCATGAATGAAATTGCTGAACTGGACCAAAGG                         AATATTATTGAGATGCACAACTACCTTACGAGTGTTTATGAGGAAGGAGAT
genomic: TTGATTGGTTCAAGGGAGTCATGAATGAAATTGCTGAACTGGACCAAAGGgtgcatagta ... tccattctagAATATTATTGAGATGCACAACTACCTTACGAGTGTTTATGAGGAAGGAGAT
EST: gi|76011642|gb|DT938812.1|DT938812
EST:     TTGATTGGTTCAAGGGAGTCATGAATGANATTGCTGAACTGGACCAAAGG                         AATATTATTGAGATGCACAACTACCTTACGAGTGTTTATGAGGAAGGAGAT
genomic: TTGATTGGTTCAAGGGAGTCATGAATGAAATTGCTGAACTGGACCAAAGGgtgcatagta ... tccattctagAATATTATTGAGATGCACAACTACCTTACGAGTGTTTATGAGGAAGGAGAT
EST: gi|5566901|gb|AI881812.1|AI881812
EST:     TTGATTGGTTCAAGGGAGTCATGAATGAAATTGCTGAACTGGACCAAAGG                         AATATTATTGAGAT
genomic: TTGATTGGTTCAAGGGAGTCATGAATGAAATTGCTGAACTGGACCAAAGGgtgcatagta ... tccattctagAATATTATTGAGAT