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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGTTCTTCTACTTGTTGGATTAGGGATTGGTGCAACTCCTTTTATCAGCATACTGAAAGATCTTCTTAACAATATTATAAGGATGGAGGAAGAGGAGgtaatttactatcttccatatcttcatttgtcaccatctgaccttcctaattccattagtgaaataacagatcacatatgaaaaatattctttctgttgggttttgtcattttgctaaccacaattctgttttatgtgtgtgcatgtgttggtag

Basic information

species Zea mays
transcript GRMZM2G138152_T02
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32928792|gb|CF033604.1|CF033604
EST:     GCATACTGAAAGATCTTCTTAACAATATCATAAGGATGGAGGAAGAGGAG                         GATGCTTCCACTGATCTTTATCCTCCAGTTGGTCCGAACAAGCCGCACATT
genomic: GCATACTGAAAGATCTTCTTAACAATATTATAAGGATGGAGGAAGAGGAGgtaatttact ... gtgttggtagGATGCTTCCACTGATCTTTATCCTCCAGTTGGTCCGAACAAGCCGCACATT
EST: gi|76011642|gb|DT938812.1|DT938812
EST:     GCATACTGAAAGATCTTCTTAACAATATTATAAGGATGGAGGAAGAGGAG                         GATGCTTCCACTGATCTTTATCCTCCAGTTGGTCCGAACAAGCCGCACATT
genomic: GCATACTGAAAGATCTTCTTAACAATATTATAAGGATGGAGGAAGAGGAGgtaatttact ... gtgttggtagGATGCTTCCACTGATCTTTATCCTCCAGTTGGTCCGAACAAGCCGCACATT
EST: gi|5566901|gb|AI881812.1|AI881812
EST:     GCATACTGAAAGATCTTCTTAACAATATTATAAGGATGGAGGAAGAGGAG                         GATGCTTCCACTGATCTCTATCCTCCAGTTGGTCCGAACAAGCCGCACATT
genomic: GCATACTGAAAGATCTTCTTAACAATATTATAAGGATGGAGGAAGAGGAGgtaatttact ... gtgttggtagGATGCTTCCACTGATCTTTATCCTCCAGTTGGTCCGAACAAGCCGCACATT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGATGTTCTTCTACTTGTTGGATTAGGGATTGGTGCAACTCCTTTTATCAGCATACTGAAAGATCTTCTTAACAATATTATAAGGATGGAGGAAGAGGAGgtaatttactatcttccatatcttcatttgtcaccatctgaccttcctaattccattagtgaaataacagatcacatatgaaaaatattctttctgttgggttttgtcattttgctaaccacaattctgttttatgtgtgtgcatgtgttggtag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG