Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcatagtaccaattgaccacttgttttgtttgagttacattttctaattgtcagaattcatatgttcccttaagtgggttttacttacagttgcctttgctccattctagAATATTATTGAGATGCACAACTACCTTACGAGTGTTTATGAGGAAGGAGATGCTCGGTCAGCGCTCATCACCATGCTTCAAGCTTTGAACCATGCAAAGA

Basic information

species Zea mays
transcript GRMZM2G138152_T02
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32929250|gb|CF034062.1|CF034062
EST:     TTGATTGGTTCAAGGGAGTCATGAATGAAACTGCTGAACTGGACCAAAGG                         AATATTATTGAGATGCACAACTACCTTACGAGTGTTTATGAGGAAGGAGAT
genomic: TTGATTGGTTCAAGGGAGTCATGAATGAAATTGCTGAACTGGACCAAAGGgtgcatagta ... tccattctagAATATTATTGAGATGCACAACTACCTTACGAGTGTTTATGAGGAAGGAGAT
EST: gi|60339853|gb|DN206826.1|DN206826
EST:     TTGATTGGTTCAAGGGAGTCATGAATGAAATTGCTGAACTGGACCAAAGG                         AATATTATTGAGATGCACAACTACCTTACGAGTGTTTATGAGGAAGGAGAT
genomic: TTGATTGGTTCAAGGGAGTCATGAATGAAATTGCTGAACTGGACCAAAGGgtgcatagta ... tccattctagAATATTATTGAGATGCACAACTACCTTACGAGTGTTTATGAGGAAGGAGAT
EST: gi|6020909|gb|AW065837.1|AW065837
EST:     TTGATTGGTTCAAGGGAGTCATGAATGAAATTGCTGAACTGGACCAAAGG                         AATATTATTGAGATGCACAACTACCTTACGAGTGTTTATGAGGAAGGAGAT
genomic: TTGATTGGTTCAAGGGAGTCATGAATGAAATTGCTGAACTGGACCAAAGGgtgcatagta ... tccattctagAATATTATTGAGATGCACAACTACCTTACGAGTGTTTATGAGGAAGGAGAT
EST: gi|76011642|gb|DT938812.1|DT938812
EST:     TTGATTGGTTCAAGGGAGTCATGAATGANATTGCTGAACTGGACCAAAGG                         AATATTATTGAGATGCACAACTACCTTACGAGTGTTTATGAGGAAGGAGAT
genomic: TTGATTGGTTCAAGGGAGTCATGAATGAAATTGCTGAACTGGACCAAAGGgtgcatagta ... tccattctagAATATTATTGAGATGCACAACTACCTTACGAGTGTTTATGAGGAAGGAGAT
EST: gi|5566901|gb|AI881812.1|AI881812
EST:     TTGATTGGTTCAAGGGAGTCATGAATGAAATTGCTGAACTGGACCAAAGG                         AATATTATTGAGAT
genomic: TTGATTGGTTCAAGGGAGTCATGAATGAAATTGCTGAACTGGACCAAAGGgtgcatagta ... tccattctagAATATTATTGAGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attcatatgttcccttaagtgggttttacttacagttgcctttgctccattctagAATATTATTGAGATGCACAACTACCTTACGAGTGTTTATGAGGAAGGAGATGCTCGGTCAGCGCTCATCACCATGCTTCAAGCTTTGAACCATGCAAAGA
                          tacttac  putative branch site (score: 1)
                                      cctttgctccattct  putative PPT
                       ttttactta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgcatagtaccaattgaccacttgttttgtttgagttacattttctaattgtcagaattcatatgttcccttaagtgggttttacttacagttgcctttgctccattctagAATATTATTGAGATGCACAACTACCTTACGAGTGTTTATGAGGAAGGAGATGCTCGGTCAGCGCTCATCACCATGCTTCAAGCTTTGAACCATGCAAAGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAAG