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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgttgatagagcaattaacagctccactccgttaagtcagctacgttggaatgctgagttttgtacctgtcatctatttagcataaatgactaaaacactgtacaatcaccttttaaggtataagctaatacccccatcatcatccgtatgctgattatgcagGTCCGGACACACTTTGCAAGACCAAATTGGAAAAAAGTCCTATCTAAAATTGCCTCGAAGCATCCATTTGCTAAGATAG

Basic information

species Zea mays
transcript GRMZM2G138152_T02
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32929250|gb|CF034062.1|CF034062
EST:     AAGCTTTGAACCATGCAAAGAATGGCGTTGACATTGTCTCTGGAACTAAA                         GTCCGGACGCACTTTGCAAGACCAAATTGGAAAAAAGTCCTATCTAAAATT
genomic: AAGCTTTGAACCATGCAAAGAATGGCGTTGACATTGTCTCTGGAACTAAAgtaagtgttg ... gattatgcagGTCCGGACACACTTTGCAAGACCAAATTGGAAAAAAGTCCTATCTAAAATT
EST: gi|60339853|gb|DN206826.1|DN206826
EST:     AAGCTTTGAACCATGCAAAGAATGGCGTTGACATTGTCTCTGGAACTAAA                         GTCCGGACACACTTTGCAAGACCAAATTGGAAAAAAGTCCTATCTAAAATT
genomic: AAGCTTTGAACCATGCAAAGAATGGCGTTGACATTGTCTCTGGAACTAAAgtaagtgttg ... gattatgcagGTCCGGACACACTTTGCAAGACCAAATTGGAAAAAAGTCCTATCTAAAATT
EST: gi|6031473|gb|AW076375.1|AW076375
EST:     AAGCTTTGAACCATGCAAAGAATGGCGTTGACATTGTCTCTGGAACTAAA                         GTCCGGACACACTTTGCAAGACCAAATTGGAAAAAAGTCCTATCTAAAATT
genomic: AAGCTTTGAACCATGCAAAGAATGGCGTTGACATTGTCTCTGGAACTAAAgtaagtgttg ... gattatgcagGTCCGGACACACTTTGCAAGACCAAATTGGAAAAAAGTCCTATCTAAAATT
EST: gi|6020909|gb|AW065837.1|AW065837
EST:     AAGCTTTGAACCATGCAAAGAATGGCGTTGACATTGTCTCTGGAACTAAA                         GTCCGGACACACTTTGCAAGACCAAATTGGAAAAAAGTCCTATCTAAAATT
genomic: AAGCTTTGAACCATGCAAAGAATGGCGTTGACATTGTCTCTGGAACTAAAgtaagtgttg ... gattatgcagGTCCGGACACACTTTGCAAGACCAAATTGGAAAAAAGTCCTATCTAAAATT
EST: gi|76011642|gb|DT938812.1|DT938812
EST:     AAGCTTTGAACCATGCAAAGAATGGCGTTGACATTGTCTCTGGAACTAAA                         GTCCGGACACACTTTGCAAGACCAAATTGGAAAAAAGTCCTATCTAAAATT
genomic: AAGCTTTGAACCATGCAAAGAATGGCGTTGACATTGTCTCTGGAACTAAAgtaagtgttg ... gattatgcagGTCCGGACACACTTTGCAAGACCAAATTGGAAAAAAGTCCTATCTAAAATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

accttttaaggtataagctaatacccccatcatcatccgtatgctgattatgcagGTCCGGACACACTTTGCAAGACCAAATTGGAAAAAAGTCCTATCTAAAATTGCCTCGAAGCATCCATTTGCTAAGATAG
                                         tgctgat  putative branch site (score: 3)
                                            tgattat  TA-rich tract