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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcaatcaaaaagacatgagaaacttgagcattcattttctgtggacctactaatatgattattgttatttttcctttcagGTGGCCATATATCCTGGTAATGTGTTGACACTGCAAATGTCCAAGCCTCCGGCTTTCCGATACAAGAGTGGGCAATATATGTTTGTTCAATGTCCAGCAG

Basic information

species Zea mays
transcript GRMZM2G138152_T02
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32928557|gb|CF033369.1|CF033369
EST:     GGGTGCTGAGGTTCTTCAGGTCTGGCAGTTATTCTGTCAGGCTATTGAAG                         GTGGCCATATATCCTGGTAATGTGTTGACACTGCAAATGTCCAAGCCTCCG
genomic: GGGTGCTGAGGTTCTTCAGGTCTGGCAGTTATTCTGTCAGGCTATTGAAGgtcaatcaaa ... ttcctttcagGTGGCCATATATCCTGGTAATGTGTTGACACTGCAAATGTCCAAGCCTCCG
EST: gi|32929468|gb|CF034280.1|CF034280
EST:     GGGTGCTGAGTTTCTTCAGGTCTGGCAGTTATTCTGTCAGGCTATTGAAG                         GTGGCCATATATCCTGGTAATGTGTTGACACTGCAAATGTCCAAGCCTCCG
genomic: GGGTGCTGAGGTTCTTCAGGTCTGGCAGTTATTCTGTCAGGCTATTGAAGgtcaatcaaa ... ttcctttcagGTGGCCATATATCCTGGTAATGTGTTGACACTGCAAATGTCCAAGCCTCCG
EST: gi|32929691|gb|CF034503.1|CF034503
EST:     GGGTGCTGAGGTTCTTCAGGTCTGGCAGTTATTCTGTCAGGCTATTGAAG                         GTGGCCATATATCCTGGCAATGTGTTGACACTGCAAATGTCCAAGCCTCCG
genomic: GGGTGCTGAGGTTCTTCAGGTCTGGCAGTTATTCTGTCAGGCTATTGAAGgtcaatcaaa ... ttcctttcagGTGGCCATATATCCTGGTAATGTGTTGACACTGCAAATGTCCAAGCCTCCG
EST: gi|32929564|gb|CF034376.1|CF034376
EST:     GGGTGCTGAGTTTCTTCAGGTCTGGCAGTTATTCTGTCAGGCTATTGAAG                         GTGGCCATATATCCTGGTAATGTGTTGACACTGCAAATGTCCAAGCCTCCG
genomic: GGGTGCTGAGGTTCTTCAGGTCTGGCAGTTATTCTGTCAGGCTATTGAAGgtcaatcaaa ... ttcctttcagGTGGCCATATATCCTGGTAATGTGTTGACACTGCAAATGTCCAAGCCTCCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagcattcattttctgtggacctactaatatgattattgttatttttcctttcagGTGGCCATATATCCTGGTAATGTGTTGACACTGCAAATGTCCAAGCCTCCGGCTTTCCGATACAAGAGTGGGCAATATATGTTTGTTCAATGTCCAGCAG
                      tactaat  putative branch site (score: 1)
                                    ttgttatttttccttt  putative PPT
                         taatatgattattgtt  TA-rich tract