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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttaggcacagttatcctgtgtgttccagaaaagaaaataatttatgtaccacctatagttttttcttttattttttttaaaatgatctggttgcacgcagGTGTATTCTACTGTGGAGCTCCAGTTCTTGCACAAGAACTAAACAAACTGTGCCATGAATTCAATGGGAAAAGCACAACGAAATTTGAGTTCCACAAGGA

Basic information

species Zea mays
transcript GRMZM2G138152_T02
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32929250|gb|CF034062.1|CF034062
EST:     GAAAAAAGTCCTATCTAAAATTGCCTCGAAGCATCCATTTGCTAAGATAG                         GTGTATTCTACTGTGGAGCTCCAGTTCTTGCACAAGAACTAAACAAACTGT
genomic: GAAAAAAGTCCTATCTAAAATTGCCTCGAAGCATCCATTTGCTAAGATAGgttagtctac ... ttgcacgcagGTGTATTCTACTGTGGAGCTCCAGTTCTTGCACAAGAACTAAACAAACTGT
EST: gi|60339853|gb|DN206826.1|DN206826
EST:     GAAAAAAGTCCTATCTAAAATTGCCTCGAAGCATCCATTTGCTAAGATAG                         GTGTATTCTACTGTGGAGCTCCAGTTCTTGCACAAGAACTAAACAAACTGT
genomic: GAAAAAAGTCCTATCTAAAATTGCCTCGAAGCATCCATTTGCTAAGATAGgttagtctac ... ttgcacgcagGTGTATTCTACTGTGGAGCTCCAGTTCTTGCACAAGAACTAAACAAACTGT
EST: gi|6022538|gb|AW067571.1|AW067571
EST:     GAAAAAAGTCCTATCTAAAATTGCCTCGAAGCATCCATTTGCTAAGATAG                         GTGTATTCTACTGTGGAGCTCCAGTTCTTGCACAAGAACTAAACAAACTGT
genomic: GAAAAAAGTCCTATCTAAAATTGCCTCGAAGCATCCATTTGCTAAGATAGgttagtctac ... ttgcacgcagGTGTATTCTACTGTGGAGCTCCAGTTCTTGCACAAGAACTAAACAAACTGT
EST: gi|6031473|gb|AW076375.1|AW076375
EST:     GAAAAAAGTCCTATCTAAAATTGCCTCGAAGCATCCATTTGCTAAGATAG                         GTGTATTCTACTGTGGAGCTCCAGTTCTTGCACAAGAACTAAACAAACTGT
genomic: GAAAAAAGTCCTATCTAAAATTGCCTCGAAGCATCCATTTGCTAAGATAGgttagtctac ... ttgcacgcagGTGTATTCTACTGTGGAGCTCCAGTTCTTGCACAAGAACTAAACAAACTGT
EST: gi|76925643|gb|DV170529.1|DV170529
EST:     AAAAAAGTCCTATCTAAAATTGCCTCGAAGCATCCATTTGCTAAGATAG                         GTGTATTCTACTGTGGAGCTCCAGTTCTTGCACAAGAACTAAACAAACTGT
genomic: AAAAAAGTCCTATCTAAAATTGCCTCGAAGCATCCATTTGCTAAGATAGgttagtctac ... ttgcacgcagGTGTATTCTACTGTGGAGCTCCAGTTCTTGCACAAGAACTAAACAAACTGT
EST: gi|6020909|gb|AW065837.1|AW065837
EST:     GAAAAAAGTCCTATCTAAAATTGCCTCGAAGCATCCATTTGCTAAGATAG                         GTGTATTCTACTGTGGAGCTCCAGTTCTTGCACAAGAACTAAACAAACTGT
genomic: GAAAAAAGTCCTATCTAAAATTGCCTCGAAGCATCCATTTGCTAAGATAGgttagtctac ... ttgcacgcagGTGTATTCTACTGTGGAGCTCCAGTTCTTGCACAAGAACTAAACAAACTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaccacctatagttttttcttttattttttttaaaatgatctggttgcacgcagGTGTATTCTACTGTGGAGCTCCAGTTCTTGCACAAGAACTAAACAAACTGTGCCATGAATTCAATGGGAAAAGCACAACGAAATTTGAGTTCCACAAGGA
        tatagttttttctttt  TA-rich tract