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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatctaatactgtacaccccgttcccaacttccatgcctctgacttctgttttaagtaatgtaagtctcgcaccctttaattattaatattctgtcctcttatttcattgttcgtcatggccatgatcagATGCTGAACCTGAGAAGCCAAGCAGCCCTTCTGTAAAGAAGGCAGAAGAGAAGGGGGTAGTTGTCGTTCATGAAACCAAATGCAAGGTGTATGTCAAG

Basic information

species Zea mays
transcript GRMZM2G086484_T02
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19770206|gb|BQ034927.1|BQ034927
EST:     GAAACCAAAATACTTCTGAAGCTTCAGCTGACGCAGATGAAG                         ATGCTGAACCTGAGAAGCCAAGCAGCCCTTCTGTAAAGAAGGCAGAAGAGA
genomic: GAAACCAAAATACTTCTGAAGCTTCAGCTGACGCAGATGAAGgtatctaata ... ccatgatcagATGCTGAACCTGAGAAGCCAAGCAGCCCTTCTGTAAAGAAGGCAGAAGAGA
EST: gi|19769590|gb|BQ034311.1|BQ034311
EST:     GCTGACGCAGATGAAG                         ATGCTGAACCTGAGAAGCCAAGCAGCCCTTGCTGTAAAGAAGGCAGAAGAG
genomic: GCTGACGCAGATGAAGgtatctaata ... ccatgatcagATGCTGAACCTGAGAAGCCAAGCAGCCCTT-CTGTAAAGAAGGCAGAAGAG
EST: gi|71311912|gb|DR792439.1|DR792439
EST:     GAAACCAAAATACTTCTGAAGCTTCAGCTGACGCAGATGAAG                         ATGCTGAACCTGAGAAGCCAAGCAGCCCTTCTGTAAAGAAGGCAGAAGAGA
genomic: GAAACCAAAATACTTCTGAAGCTTCAGCTGACGCAGATGAAGgtatctaata ... ccatgatcagATGCTGAACCTGAGAAGCCAAGCAGCCCTTCTGTAAAGAAGGCAGAAGAGA
EST: gi|71762836|gb|DR960773.1|DR960773
EST:     GAAACCAAAATACTTCTGAAGCTTCAGCTGACGCAGATGAAG                         ATGCTGAACCTGAGAAGCCAAGCAGCCCTTCTGTAAAGAAGGCAGAAGAGA
genomic: GAAACCAAAATACTTCTGAAGCTTCAGCTGACGCAGATGAAGgtatctaata ... ccatgatcagATGCTGAACCTGAGAAGCCAAGCAGCCCTTCTGTAAAGAAGGCAGAAGAGA
EST: gi|71315320|gb|DR794272.1|DR794272
EST:     GAAACAAAAATATTTCTGAAGCTTCAGCTGACGCAGATGAAG                         ATGCTGAACCTGAGAAGCCAAGCAGCCCTTCTGTAAAGAAGGCAGAAGAGA
genomic: GAAACCAAAATACTTCTGAAGCTTCAGCTGACGCAGATGAAGgtatctaata ... ccatgatcagATGCTGAACCTGAGAAGCCAAGCAGCCCTTCTGTAAAGAAGGCAGAAGAGA
EST: gi|19822448|gb|BQ048472.1|BQ048472
EST:     GAAACCAAAATACTTCTGATGCTTCAGCTGACGCAGATGAAG                         ATGCTGAACCTGAGAAGCCAAGCAGCCCTTCTGTAAAGAAGGCAGAAGAGA
genomic: GAAACCAAAATACTTCTGAAGCTTCAGCTGACGCAGATGAAGgtatctaata ... ccatgatcagATGCTGAACCTGAGAAGCCAAGCAGCCCTTCTGTAAAGAAGGCAGAAGAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttaattattaatattctgtcctcttatttcattgttcgtcatggccatgatcagATGCTGAACCTGAGAAGCCAAGCAGCCCTTCTGTAAAGAAGGCAGAAGAGAAGGGGGTAGTTGTCGTTCATGAAACCAAATGCAAGGTGTATGTCAAG
      tattaat  putative branch site (score: 2)
     ttattaatattctgt  TA-rich tract