1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...atcttgtattttcatactttactttctttttgttcatttcttaggtggtttgttagtcagattactcattgcatatgcatatacacttgttgttcattagGAAAAATTCAAGGATGTTGTCAACTGGCTAAGGCAAAATCAAGCAGGTTCAATAGTTGTTTCATCCCCAAGCTCACTGAAGGATGATAAGTCCAATCTGC
species | Zea mays |
transcript | GRMZM2G086484_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTTGGGAGGACGGCCTTAAGGATTACATATCACATGCTTCTGAAATCATG GAAAAATTCAAGGATGTTGTCAACTGGCTAAGGCAAAATCAAGCAGGTTCAEST: gi|211283774|gb|FL132376.1|FL132376
genomic: TTTGGGAGGACGGCCTTAAGGATTACATATCACATGCTTCTGAAATCATGgtaaagtctc ... tgttcattagGAAAAATTCAAGGATGTTGTCAACTGGCTAAGGCAAAATCAAGCAGGTTCA
EST: TTGGGAGGACGGNCTTAAGGATTACATATCACATGCTTTCTGAA-TCATG GAAAAATTCAAGGATGTTGTCAACTGGCTAAGGCAAAATCAAGCAGGTTCAEST: gi|31361452|gb|CD445809.1|CD445809
genomic: T-GGGAGGACGGCCTTAAGGATTACATATCACATGCTT-CTGAAATCATGgtaaagtctc ... tgttcattagGAAAAATTCAAGGATGTTGTCAACTGGCTAAGGCAAAATCAAGCAGGTTCA
EST: TTTGGGAGGACGGCCTTAAGGATTACATATCACATGCTTCTGAAATCATG GAAAAATTCAAGGATGTTGTCAACTGGCTAAGGCAAAATCAAGCAGGTTCAEST: gi|22546264|gb|BU098575.1|BU098575
genomic: TTTGGGAGGACGGCCTTAAGGATTACATATCACATGCTTCTGAAATCATGgtaaagtctc ... tgttcattagGAAAAATTCAAGGATGTTGTCAACTGGCTAAGGCAAAATCAAGCAGGTTCA
EST: TTTGGGAGGACGGCCTTAAGGATTACATATCACATGCTTCTGAAATCATG GAAAAATTCAAGGATGTTGTCAACTGGCTAAGGCAAAATCAAGCAGGTTCAEST: gi|149014128|gb|EE043668.2|EE043668
genomic: TTTGGGAGGACGGCCTTAAGGATTACATATCACATGCTTCTGAAATCATGgtaaagtctc ... tgttcattagGAAAAATTCAAGGATGTTGTCAACTGGCTAAGGCAAAATCAAGCAGGTTCA
EST: TTTGGGAGGACGGCCTTAAGGATTACATATCACATGCTTCTGAAATCATG GAAAAATTCAAGGATGTTGTCAACTGGCTAAGGCAAAATCAAGCAGGTTCAEST: gi|71311913|gb|DR792440.1|DR792440
genomic: TTTGGGAGGACGGCCTTAAGGATTACATATCACATGCTTCTGAAATCATGgtaaagtctc ... tgttcattagGAAAAATTCAAGGATGTTGTCAACTGGCTAAGGCAAAATCAAGCAGGTTCA
EST: TTTGGGAGGACGGCCTTAAGGATTACATATCACATGCTTCTGAAATCATG GAAAAATTCAAGGATGTTGTCAACTGGCTAAGGCAAAATCAAGCAGGTTCAEST: gi|71448533|gb|DR829583.1|DR829583
genomic: TTTGGGAGGACGGCCTTAAGGATTACATATCACATGCTTCTGAAATCATGgtaaagtctc ... tgttcattagGAAAAATTCAAGGATGTTGTCAACTGGCTAAGGCAAAATCAAGCAGGTTCA
EST: TTTGGGAGGACGGCCTTAAGGATTACATATCACATGCTTCTGAAATCATG GAAAAATTCAAGGATGTTGTCAACTGGCTAAGGCAAAATCAAGCAGGTTCAEST: gi|211283778|gb|FL132380.1|FL132380
genomic: TTTGGGAGGACGGCCTTAAGGATTACATATCACATGCTTCTGAAATCATGgtaaagtctc ... tgttcattagGAAAAATTCAAGGATGTTGTCAACTGGCTAAGGCAAAATCAAGCAGGTTCA
EST: TTTGGGAGGACGGCCTTAAGGATTACATATCACATGCTTCTGAAATCATG GAAAAATTCAAGGATGTTGTCAACTGGCTAAGGCAAAATCAAGCAGGTTCAEST: gi|50334338|gb|CO529464.1|CO529464
genomic: TTTGGGAGGACGGCCTTAAGGATTACATATCACATGCTTCTGAAATCATGgtaaagtctc ... tgttcattagGAAAAATTCAAGGATGTTGTCAACTGGCTAAGGCAAAATCAAGCAGGTTCA
EST: TTTGGGAGGACGGCCTTAAGGATTACATATCACATGCTTCTGAAATCATG GAAAAATTCCAGGATGTTGTCAACTGGCTAAGGCAAGATCAAGCAGGTTCAEST: gi|211283773|gb|FL132375.1|FL132375
genomic: TTTGGGAGGACGGCCTTAAGGATTACATATCACATGCTTCTGAAATCATGgtaaagtctc ... tgttcattagGAAAAATTCAAGGATGTTGTCAACTGGCTAAGGCAAAATCAAGCAGGTTCA
EST: TTTGGGAGGACGGCCTTAAGGATTACATATCACATGCTTCTGAAATCATG GAAAAATTCAAGGATGTTGTCAACTGGCTAAGGCAAAATCAAGCEST: gi|28987141|gb|CB351484.1|CB351484
genomic: TTTGGGAGGACGGCCTTAAGGATTACATATCACATGCTTCTGAAATCATGgtaaagtctc ... tgttcattagGAAAAATTCAAGGATGTTGTCAACTGGCTAAGGCAAAATCAAGC
EST: TTTGGGAGGACGGCCTTAAGGATTACATATCACATGCTTCTGAAATCATG GAAAAATTCAAGGATGTTGTCAACTGGCTAAGGCAAAATCAAGCAGGTTCAEST: gi|76915806|gb|DV166129.1|DV166129
genomic: TTTGGGAGGACGGCCTTAAGGATTACATATCACATGCTTCTGAAATCATGgtaaagtctc ... tgttcattagGAAAAATTCAAGGATGTTGTCAACTGGCTAAGGCAAAATCAAGCAGGTTCA
EST: TTTGGGAGGACGGCCTTAAGGATTACATATCACATGCTTCTGAAATCATG GAAAAATTCAAGGATGTTGTCAACTGGCTAAGGCAAAATCAAGCAGGTTCAEST: gi|13558335|gb|BG549691.1|BG549691
genomic: TTTGGGAGGACGGCCTTAAGGATTACATATCACATGCTTCTGAAATCATGgtaaagtctc ... tgttcattagGAAAAATTCAAGGATGTTGTCAACTGGCTAAGGCAAAATCAAGCAGGTTCA
EST: GGGAGGACGGCCTTAAGGATTACATATCACATGCTTCTGAAATCATG GAAAAATTCAAGGATGTTGTCAACTGGCTAAGGCAAAATCAAGCAGGTTCAEST: gi|94473209|gb|EB702167.1|EB702167
genomic: GGGAGGACGGCCTTAAGGATTACATATCACATGCTTCTGAAATCATGgtaaagtctc ... tgttcattagGAAAAATTCAAGGATGTTGTCAACTGGCTAAGGCAAAATCAAGCAGGTTCA
EST: TTTGGGAGGACGGCCTTAAGGATTACATATCACATGCTTCTGAAATCATG GAAAAATTCAAGGATGTTGTCAACTGGCTAAGGCAAAATCAAGCAGGTTCAEST: gi|94473338|gb|EB702296.1|EB702296
genomic: TTTGGGAGGACGGCCTTAAGGATTACATATCACATGCTTCTGAAATCATGgtaaagtctc ... tgttcattagGAAAAATTCAAGGATGTTGTCAACTGGCTAAGGCAAAATCAAGCAGGTTCA
EST: TTTGGGAGGACGGCCTTAAGGATTACATATCACATGCTTCTGAAATCATG GAAAAATTCAAGGATGTTGTCAACTGGCTAAGGCAAAATCAAGCAGGTTCAEST: gi|78105254|gb|DV523672.1|DV523672
genomic: TTTGGGAGGACGGCCTTAAGGATTACATATCACATGCTTCTGAAATCATGgtaaagtctc ... tgttcattagGAAAAATTCAAGGATGTTGTCAACTGGCTAAGGCAAAATCAAGCAGGTTCA
EST: TTTGGGAGGACGGCCTTAAGGATTACATATCACATGCTTCTGAAATCATG GAAAAATTCAAGGATGTTGTCAACTGGCTAAGGCAAAATCAAGCAGGTTCAEST: gi|88757793|gb|DY541934.1|DY541934
genomic: TTTGGGAGGACGGCCTTAAGGATTACATATCACATGCTTCTGAAATCATGgtaaagtctc ... tgttcattagGAAAAATTCAAGGATGTTGTCAACTGGCTAAGGCAAAATCAAGCAGGTTCA
EST: TTTGGGAGGACGGCCTTAAGGATTACATATCACATGCTTCTGAAATCATG GAAAAATTCAAGGATGTTGTCAACTGGCTAAGGCAAAATCAAGCAGGTTCAEST: gi|26558697|gb|CA830932.1|CA830932
genomic: TTTGGGAGGACGGCCTTAAGGATTACATATCACATGCTTCTGAAATCATGgtaaagtctc ... tgttcattagGAAAAATTCAAGGATGTTGTCAACTGGCTAAGGCAAAATCAAGCAGGTTCA
EST: TTTGGGAGGACGGCCTTAAGGATTACATATCACATGCTTCTGAAATCATG GAAAAATTCAAGGATGTTGTCAACTGGCTAAGGCAAAATCAAGCAGGTTCA
genomic: TTTGGGAGGACGGCCTTAAGGATTACATATCACATGCTTCTGAAATCATGgtaaagtctc ... tgttcattagGAAAAATTCAAGGATGTTGTCAACTGGCTAAGGCAAAATCAAGCAGGTTCA
tggtttgttagtcagattactcattgcatatgcatatacacttgttgttcattagGAAAAATTCAAGGATGTTGTCAACTGGCTAAGGCAAAATCAAGCAGGTTCAATAGTTGTTTCATCCCCAAGCTCACTGAAGGATGATAAGTCCAATCTGC
atataca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcttgtattttcatactttactttctttttgttcatttcttaggtggtttgttagtcagattactcattgcatatgcatatacacttgttgttcattagGAAAAATTCAAGGATGTTGTCAACTGGCTAAGGCAAAATCAAGCAGGTTCAATAGTTGTTTCATCCCCAAGCTCACTGAAGGATGATAAGTCCAATCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG