1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CTTCCCATCAGCATGTGATGGCAGGACCCGCTAGTTTAGATCCTCGGCGGGCGGAGGCTGCTAGCAAACATGTGAGGGCACTTAATACCCAGTTTGCAAGgtgtgttccttcacctgttggcttgtactcctcctgtgtgttgaaacatatactctgttggaagcacagcttactaactcgttatgctcacagttttctt...
species | Zea mays |
transcript | GRMZM2G086484_T02 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCGGAGGCTGCTAGCAAACATGTGAGGGCACTTAATACCCAGTTTGCAAG CTGGGTTCAATTGCAGCTGCAAAATCATCCAGCTGAACTTTGGGAGGACGGEST: gi|211283774|gb|FL132376.1|FL132376
genomic: GCGGAGGCTGCTAGCAAACATGTGAGGGCACTTAATACCCAGTTTGCAAGgtgtgttcct ... ttttgagcagCTGGGTTCAATTGCAGCTGCAAAATCATCCAGCTGAACTTTGGGAGGACGG
EST: GCGGAGGCTGCTAGCAAACATGTGAGGGCACTTAATACCCAGTTTGCAAG CTGGGGTTCA-TTGCAGCTGCAAAATCATCCAGCTGGACTTTTGGGAGGACEST: gi|31361452|gb|CD445809.1|CD445809
genomic: GCGGAGGCTGCTAGCAAACATGTGAGGGCACTTAATACCCAGTTTGCAAGgtgtgttcct ... ttttgagcagCTGGG-TTCAATTGCAGCTGCAAAATCATCCAGCTGAACTTT-GGGAGGAC
EST: GCGGAGGCTGCTAGCAAACATGTGAGGGCACTTAATACCCAGTTTGCAAG CTGGGTTCAATTGCAGCTGCAAAATCATCCAGCTGAACTTTGGGAGGACGGEST: gi|33467333|gb|CF244382.1|CF244382
genomic: GCGGAGGCTGCTAGCAAACATGTGAGGGCACTTAATACCCAGTTTGCAAGgtgtgttcct ... ttttgagcagCTGGGTTCAATTGCAGCTGCAAAATCATCCAGCTGAACTTTGGGAGGACGG
EST: GCGGAGGCTGCTAGCAAACATGTGAGGGCACTTAATACCCAGTTTGCAAG CTGGGTTCAATTGCAGCTGCAAAATCATCCAGCTGAACEST: gi|22546264|gb|BU098575.1|BU098575
genomic: GCGGAGGCTGCTAGCAAACATGTGAGGGCACTTAATACCCAGTTTGCAAGgtgtgttcct ... ttttgagcagCTGGGTTCAATTGCAGCTGCAAAATCATCCAGCTGAAC
EST: GCGGAGGCTGCTAGCAAACATGTGAGGGCACTTAATACCCAGTTTGCAAG CTGGGTTCAATTGCAGCTGCAAAATCATCCAGCTGAACTTTGGGAGGACGGEST: gi|149014128|gb|EE043668.2|EE043668
genomic: GCGGAGGCTGCTAGCAAACATGTGAGGGCACTTAATACCCAGTTTGCAAGgtgtgttcct ... ttttgagcagCTGGGTTCAATTGCAGCTGCAAAATCATCCAGCTGAACTTTGGGAGGACGG
EST: GCGGAGGCTGCTAGCAAACATGTGAGGGCACTTAATACCCAGTTTGCAAG CTGGGTTCAATTGCAGCTGCAAAATCATCCAGCTGAACTTTGGGAGGACGGEST: gi|71311913|gb|DR792440.1|DR792440
genomic: GCGGAGGCTGCTAGCAAACATGTGAGGGCACTTAATACCCAGTTTGCAAGgtgtgttcct ... ttttgagcagCTGGGTTCAATTGCAGCTGCAAAATCATCCAGCTGAACTTTGGGAGGACGG
EST: GCGGAGGCTGCTAGCAAACATGTGAGGGCACTTAATACCCAGTTTGCAAG CTGGGTTCAATTGCAGCTGCAAAATCATCCAGCTGAACTTTGGGAGGACGGEST: gi|71448533|gb|DR829583.1|DR829583
genomic: GCGGAGGCTGCTAGCAAACATGTGAGGGCACTTAATACCCAGTTTGCAAGgtgtgttcct ... ttttgagcagCTGGGTTCAATTGCAGCTGCAAAATCATCCAGCTGAACTTTGGGAGGACGG
EST: GCGGAGGCTGCTAGCAAACATGTGAGGGCACTTAATACCCAGTTTGCAAG CTGGGTTCAATTGCAGCTGCAAAATCATCCAGCTGAACTTTGGGAGGACGGEST: gi|211283778|gb|FL132380.1|FL132380
genomic: GCGGAGGCTGCTAGCAAACATGTGAGGGCACTTAATACCCAGTTTGCAAGgtgtgttcct ... ttttgagcagCTGGGTTCAATTGCAGCTGCAAAATCATCCAGCTGAACTTTGGGAGGACGG
EST: GCGGAGGCTGCTAGCAAACATGTGAGGGCACTTAATACCCAGTTTGCAAG CTGGGTTCAATTGCAGCTGCAAAATCATCCAGCTGAACTTTGGGAGGACGGEST: gi|50334338|gb|CO529464.1|CO529464
genomic: GCGGAGGCTGCTAGCAAACATGTGAGGGCACTTAATACCCAGTTTGCAAGgtgtgttcct ... ttttgagcagCTGGGTTCAATTGCAGCTGCAAAATCATCCAGCTGAACTTTGGGAGGACGG
EST: GCGGAGGCTGCTACCAAACATGTGAGGGCACTTAATACCCAGTTTGCAAG CTGGGTTCAATTGCAGCTGCAAAATCATCCAGCTGAACTTTGGGAGGACGGEST: gi|211283773|gb|FL132375.1|FL132375
genomic: GCGGAGGCTGCTAGCAAACATGTGAGGGCACTTAATACCCAGTTTGCAAGgtgtgttcct ... ttttgagcagCTGGGTTCAATTGCAGCTGCAAAATCATCCAGCTGAACTTTGGGAGGACGG
EST: GCGGAGGCTGCTAGCAAACATGTGAGGGCACTTAATACCCAGTTTGCAAG CTGGGTTCAATTGCAGCTGCAAAATCATCCAGCTGAACTTTGGGAGGACGGEST: gi|28987141|gb|CB351484.1|CB351484
genomic: GCGGAGGCTGCTAGCAAACATGTGAGGGCACTTAATACCCAGTTTGCAAGgtgtgttcct ... ttttgagcagCTGGGTTCAATTGCAGCTGCAAAATCATCCAGCTGAACTTTGGGAGGACGG
EST: GCGGAGGCTGCTAGCAAACATGTGAGGGCACTTAATACCCAGTTTGCAAG CTGGGTTCAATTGCAGCTGCAAAATCATCCAGCTGAACTTTGGGAGGACGGEST: gi|76915806|gb|DV166129.1|DV166129
genomic: GCGGAGGCTGCTAGCAAACATGTGAGGGCACTTAATACCCAGTTTGCAAGgtgtgttcct ... ttttgagcagCTGGGTTCAATTGCAGCTGCAAAATCATCCAGCTGAACTTTGGGAGGACGG
EST: GCGGAGGCTGCTAGCAAACATGTGAGGGCACTTAATACCCAGTTTGCAAG CTGGGTTCAATTGCAGCTGCAAAATCATCCAGCTGAACTTTGGGAGGACGGEST: gi|94473209|gb|EB702167.1|EB702167
genomic: GCGGAGGCTGCTAGCAAACATGTGAGGGCACTTAATACCCAGTTTGCAAGgtgtgttcct ... ttttgagcagCTGGGTTCAATTGCAGCTGCAAAATCATCCAGCTGAACTTTGGGAGGACGG
EST: GCGGAGGCTGCTAGCAAACATGTGAGGGCACTTAATACCCAGTTTGCAAG CTGGGTTCAATTGCAGCTGCAAAATCATCCAGCTGAACTTTGGGAGGACGGEST: gi|94473338|gb|EB702296.1|EB702296
genomic: GCGGAGGCTGCTAGCAAACATGTGAGGGCACTTAATACCCAGTTTGCAAGgtgtgttcct ... ttttgagcagCTGGGTTCAATTGCAGCTGCAAAATCATCCAGCTGAACTTTGGGAGGACGG
EST: GCGGAGGCTGCTAGCAAACATGTGAGGGCACTTAATACCCAGTTTGCAAG CTGGGTTCAATTGCAGCTGCAAAATCATCCAGCTGAACTTTGGGAGGACGGEST: gi|78105254|gb|DV523672.1|DV523672
genomic: GCGGAGGCTGCTAGCAAACATGTGAGGGCACTTAATACCCAGTTTGCAAGgtgtgttcct ... ttttgagcagCTGGGTTCAATTGCAGCTGCAAAATCATCCAGCTGAACTTTGGGAGGACGG
EST: GCGGAGGCTGCTAGCAAACATGTGAGGGCACTTAATACCCAGTTTGCAAG CTGGGTTCAATTGCAGCTGCAAAATCATCCAGCTGAACTTTGGGAGGACGGEST: gi|88757793|gb|DY541934.1|DY541934
genomic: GCGGAGGCTGCTAGCAAACATGTGAGGGCACTTAATACCCAGTTTGCAAGgtgtgttcct ... ttttgagcagCTGGGTTCAATTGCAGCTGCAAAATCATCCAGCTGAACTTTGGGAGGACGG
EST: GCGGAGGCTGCTAGCAAACATGTGAGGGCACTTAATACCCAGTTTGCAAG CTGGGTTCAATTGCAGCTGCAAAATCATCCAGCTGAACTTTGGGAGGACGGEST: gi|26558697|gb|CA830932.1|CA830932
genomic: GCGGAGGCTGCTAGCAAACATGTGAGGGCACTTAATACCCAGTTTGCAAGgtgtgttcct ... ttttgagcagCTGGGTTCAATTGCAGCTGCAAAATCATCCAGCTGAACTTTGGGAGGACGG
EST: GGAGGCTGCTAGCAAACATGTGAGGGCACTTAATACCCAGTTTGCAAG CTGGGTTCAATTGCAGCTGCAAAATCATCCAGCTGAACTTTGGGAGGACGG
genomic: GGAGGCTGCTAGCAAACATGTGAGGGCACTTAATACCCAGTTTGCAAGgtgtgttcct ... ttttgagcagCTGGGTTCAATTGCAGCTGCAAAATCATCCAGCTGAACTTTGGGAGGACGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTCCCATCAGCATGTGATGGCAGGACCCGCTAGTTTAGATCCTCGGCGGGCGGAGGCTGCTAGCAAACATGTGAGGGCACTTAATACCCAGTTTGCAAGgtgtgttccttcacctgttggcttgtactcctcctgtgtgttgaaacatatactctgttggaagcacagcttactaactcgttatgctcacagttttctt
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