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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgacagcagtaatccttttcagtttggtgcaaataatggttttccaacatccaatgcaccatctattttttcttcagTTGCCCAAAGTTTTAACCCACAGAGTCCACCTCTGTTTTCAATGAATCAACAATCAGTCCTCCCAG

Basic information

species Zea mays
transcript GRMZM2G086484_T02
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19822448|gb|BQ048472.1|BQ048472
EST:     CCATTTTGGTGCAAACAAGGGCATATTTGGCGACAAGAAGACGAC-AGTG                         TTGCCCAAAGTTTTAACCCACAGAGTCCACCTCTGTTTTCAATGAATCAAC
genomic: CCATTTTGGTGCAAACAAGGGCATATTTGGCGACAAGAAGACGACAAGTGgtgacagcag ... ttttcttcagTTGCCCAAAGTTTTAACCCACAGAGTCCACCTCTGTTTTCAATGAATCAAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttggtgcaaataatggttttccaacatccaatgcaccatctattttttcttcagTTGCCCAAAGTTTTAACCCACAGAGTCCACCTCTGTTTTCAATGAATCAACAATCAGTCCTCCCAG
                                    ccatctattttttctt  CT-rich tract
                                      atctattttttctt  TA-rich tract