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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGGTTCAATTGCAGCTGCAAAATCATCCAGCTGAACTTTGGGAGGACGGCCTTAAGGATTACATATCACATGCTTCTGAAATCATGgtaaagtctcactggctgtggatagacttgctcattaattggtgtcaccaatattttttttgctaaagctataggattatcatttgtataacagtactgc...

Basic information

species Zea mays
transcript GRMZM2G086484_T02
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87156040|gb|DY400829.1|DY400829
EST:     TTTGGGAGGACGGCCTTAAGGATTACATATCACATGCTTCTGAAATCATG                         GAAAAATTCAAGGATGTTGTCAACTGGCTAAGGCAAAATCAAGCAGGTTCA
genomic: TTTGGGAGGACGGCCTTAAGGATTACATATCACATGCTTCTGAAATCATGgtaaagtctc ... tgttcattagGAAAAATTCAAGGATGTTGTCAACTGGCTAAGGCAAAATCAAGCAGGTTCA
EST: gi|211283774|gb|FL132376.1|FL132376
EST:     TTGGGAGGACGGNCTTAAGGATTACATATCACATGCTTTCTGAA-TCATG                         GAAAAATTCAAGGATGTTGTCAACTGGCTAAGGCAAAATCAAGCAGGTTCA
genomic: T-GGGAGGACGGCCTTAAGGATTACATATCACATGCTT-CTGAAATCATGgtaaagtctc ... tgttcattagGAAAAATTCAAGGATGTTGTCAACTGGCTAAGGCAAAATCAAGCAGGTTCA
EST: gi|31361452|gb|CD445809.1|CD445809
EST:     TTTGGGAGGACGGCCTTAAGGATTACATATCACATGCTTCTGAAATCATG                         GAAAAATTCAAGGATGTTGTCAACTGGCTAAGGCAAAATCAAGCAGGTTCA
genomic: TTTGGGAGGACGGCCTTAAGGATTACATATCACATGCTTCTGAAATCATGgtaaagtctc ... tgttcattagGAAAAATTCAAGGATGTTGTCAACTGGCTAAGGCAAAATCAAGCAGGTTCA
EST: gi|22546264|gb|BU098575.1|BU098575
EST:     TTTGGGAGGACGGCCTTAAGGATTACATATCACATGCTTCTGAAATCATG                         GAAAAATTCAAGGATGTTGTCAACTGGCTAAGGCAAAATCAAGCAGGTTCA
genomic: TTTGGGAGGACGGCCTTAAGGATTACATATCACATGCTTCTGAAATCATGgtaaagtctc ... tgttcattagGAAAAATTCAAGGATGTTGTCAACTGGCTAAGGCAAAATCAAGCAGGTTCA
EST: gi|149014128|gb|EE043668.2|EE043668
EST:     TTTGGGAGGACGGCCTTAAGGATTACATATCACATGCTTCTGAAATCATG                         GAAAAATTCAAGGATGTTGTCAACTGGCTAAGGCAAAATCAAGCAGGTTCA
genomic: TTTGGGAGGACGGCCTTAAGGATTACATATCACATGCTTCTGAAATCATGgtaaagtctc ... tgttcattagGAAAAATTCAAGGATGTTGTCAACTGGCTAAGGCAAAATCAAGCAGGTTCA
EST: gi|71311913|gb|DR792440.1|DR792440
EST:     TTTGGGAGGACGGCCTTAAGGATTACATATCACATGCTTCTGAAATCATG                         GAAAAATTCAAGGATGTTGTCAACTGGCTAAGGCAAAATCAAGCAGGTTCA
genomic: TTTGGGAGGACGGCCTTAAGGATTACATATCACATGCTTCTGAAATCATGgtaaagtctc ... tgttcattagGAAAAATTCAAGGATGTTGTCAACTGGCTAAGGCAAAATCAAGCAGGTTCA
EST: gi|71448533|gb|DR829583.1|DR829583
EST:     TTTGGGAGGACGGCCTTAAGGATTACATATCACATGCTTCTGAAATCATG                         GAAAAATTCAAGGATGTTGTCAACTGGCTAAGGCAAAATCAAGCAGGTTCA
genomic: TTTGGGAGGACGGCCTTAAGGATTACATATCACATGCTTCTGAAATCATGgtaaagtctc ... tgttcattagGAAAAATTCAAGGATGTTGTCAACTGGCTAAGGCAAAATCAAGCAGGTTCA
EST: gi|211283778|gb|FL132380.1|FL132380
EST:     TTTGGGAGGACGGCCTTAAGGATTACATATCACATGCTTCTGAAATCATG                         GAAAAATTCAAGGATGTTGTCAACTGGCTAAGGCAAAATCAAGCAGGTTCA
genomic: TTTGGGAGGACGGCCTTAAGGATTACATATCACATGCTTCTGAAATCATGgtaaagtctc ... tgttcattagGAAAAATTCAAGGATGTTGTCAACTGGCTAAGGCAAAATCAAGCAGGTTCA
EST: gi|50334338|gb|CO529464.1|CO529464
EST:     TTTGGGAGGACGGCCTTAAGGATTACATATCACATGCTTCTGAAATCATG                         GAAAAATTCCAGGATGTTGTCAACTGGCTAAGGCAAGATCAAGCAGGTTCA
genomic: TTTGGGAGGACGGCCTTAAGGATTACATATCACATGCTTCTGAAATCATGgtaaagtctc ... tgttcattagGAAAAATTCAAGGATGTTGTCAACTGGCTAAGGCAAAATCAAGCAGGTTCA
EST: gi|211283773|gb|FL132375.1|FL132375
EST:     TTTGGGAGGACGGCCTTAAGGATTACATATCACATGCTTCTGAAATCATG                         GAAAAATTCAAGGATGTTGTCAACTGGCTAAGGCAAAATCAAGC
genomic: TTTGGGAGGACGGCCTTAAGGATTACATATCACATGCTTCTGAAATCATGgtaaagtctc ... tgttcattagGAAAAATTCAAGGATGTTGTCAACTGGCTAAGGCAAAATCAAGC
EST: gi|28987141|gb|CB351484.1|CB351484
EST:     TTTGGGAGGACGGCCTTAAGGATTACATATCACATGCTTCTGAAATCATG                         GAAAAATTCAAGGATGTTGTCAACTGGCTAAGGCAAAATCAAGCAGGTTCA
genomic: TTTGGGAGGACGGCCTTAAGGATTACATATCACATGCTTCTGAAATCATGgtaaagtctc ... tgttcattagGAAAAATTCAAGGATGTTGTCAACTGGCTAAGGCAAAATCAAGCAGGTTCA
EST: gi|76915806|gb|DV166129.1|DV166129
EST:     TTTGGGAGGACGGCCTTAAGGATTACATATCACATGCTTCTGAAATCATG                         GAAAAATTCAAGGATGTTGTCAACTGGCTAAGGCAAAATCAAGCAGGTTCA
genomic: TTTGGGAGGACGGCCTTAAGGATTACATATCACATGCTTCTGAAATCATGgtaaagtctc ... tgttcattagGAAAAATTCAAGGATGTTGTCAACTGGCTAAGGCAAAATCAAGCAGGTTCA
EST: gi|13558335|gb|BG549691.1|BG549691
EST:     GGGAGGACGGCCTTAAGGATTACATATCACATGCTTCTGAAATCATG                         GAAAAATTCAAGGATGTTGTCAACTGGCTAAGGCAAAATCAAGCAGGTTCA
genomic: GGGAGGACGGCCTTAAGGATTACATATCACATGCTTCTGAAATCATGgtaaagtctc ... tgttcattagGAAAAATTCAAGGATGTTGTCAACTGGCTAAGGCAAAATCAAGCAGGTTCA
EST: gi|94473209|gb|EB702167.1|EB702167
EST:     TTTGGGAGGACGGCCTTAAGGATTACATATCACATGCTTCTGAAATCATG                         GAAAAATTCAAGGATGTTGTCAACTGGCTAAGGCAAAATCAAGCAGGTTCA
genomic: TTTGGGAGGACGGCCTTAAGGATTACATATCACATGCTTCTGAAATCATGgtaaagtctc ... tgttcattagGAAAAATTCAAGGATGTTGTCAACTGGCTAAGGCAAAATCAAGCAGGTTCA
EST: gi|94473338|gb|EB702296.1|EB702296
EST:     TTTGGGAGGACGGCCTTAAGGATTACATATCACATGCTTCTGAAATCATG                         GAAAAATTCAAGGATGTTGTCAACTGGCTAAGGCAAAATCAAGCAGGTTCA
genomic: TTTGGGAGGACGGCCTTAAGGATTACATATCACATGCTTCTGAAATCATGgtaaagtctc ... tgttcattagGAAAAATTCAAGGATGTTGTCAACTGGCTAAGGCAAAATCAAGCAGGTTCA
EST: gi|78105254|gb|DV523672.1|DV523672
EST:     TTTGGGAGGACGGCCTTAAGGATTACATATCACATGCTTCTGAAATCATG                         GAAAAATTCAAGGATGTTGTCAACTGGCTAAGGCAAAATCAAGCAGGTTCA
genomic: TTTGGGAGGACGGCCTTAAGGATTACATATCACATGCTTCTGAAATCATGgtaaagtctc ... tgttcattagGAAAAATTCAAGGATGTTGTCAACTGGCTAAGGCAAAATCAAGCAGGTTCA
EST: gi|88757793|gb|DY541934.1|DY541934
EST:     TTTGGGAGGACGGCCTTAAGGATTACATATCACATGCTTCTGAAATCATG                         GAAAAATTCAAGGATGTTGTCAACTGGCTAAGGCAAAATCAAGCAGGTTCA
genomic: TTTGGGAGGACGGCCTTAAGGATTACATATCACATGCTTCTGAAATCATGgtaaagtctc ... tgttcattagGAAAAATTCAAGGATGTTGTCAACTGGCTAAGGCAAAATCAAGCAGGTTCA
EST: gi|26558697|gb|CA830932.1|CA830932
EST:     TTTGGGAGGACGGCCTTAAGGATTACATATCACATGCTTCTGAAATCATG                         GAAAAATTCAAGGATGTTGTCAACTGGCTAAGGCAAAATCAAGCAGGTTCA
genomic: TTTGGGAGGACGGCCTTAAGGATTACATATCACATGCTTCTGAAATCATGgtaaagtctc ... tgttcattagGAAAAATTCAAGGATGTTGTCAACTGGCTAAGGCAAAATCAAGCAGGTTCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTGGGTTCAATTGCAGCTGCAAAATCATCCAGCTGAACTTTGGGAGGACGGCCTTAAGGATTACATATCACATGCTTCTGAAATCATGgtaaagtctcactggctgtggatagacttgctcattaattggtgtcaccaatattttttttgctaaagctataggattatcatttgtataacagtactgc

- - - - - - - - - - - - - - - - - - - - - GGAGGA