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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGGCTCCAATTATGGCTTCTAGTTCTTCATCTTTTCAGAACTCAAGCTTACCGAACCTTTTTTCATCGCCTTCTCAGCAAAAAACACCAGATTACAGTGgtacggctactcactggtttgtataatatactttgtttacatttattgcagagtcttctcgcagacttatgtactatatattcatatctattatgtcaatgacatccag

Basic information

species Zea mays
transcript GRMZM2G086484_T02
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87156040|gb|DY400829.1|DY400829
EST:     ACCGAACCTTTTTTCATCGCCTTCTCAGCAAAAAACACCAGATTACAGTG                         GTATGTTTGCTGACAAGAAGAACACGTCCAGTGATAGCAGTAAACCACCTT
genomic: ACCGAACCTTTTTTCATCGCCTTCTCAGCAAAAAACACCAGATTACAGTGgtacggctac ... tgacatccagGTATGTTTGCTGACAAGAAGAACACGTCCAGTGATAGCAGTAAACCAGCTT
EST: gi|31361452|gb|CD445809.1|CD445809
EST:     ACCGAACCTTTTTTCATCGCCTTCTCAGCAAAAAACACCAGATTACAGTG                         GTATGTTTGCTGACAAGAAGAACACGTCCAGTGATAGCAGTAAACCACCTT
genomic: ACCGAACCTTTTTTCATCGCCTTCTCAGCAAAAAACACCAGATTACAGTGgtacggctac ... tgacatccagGTATGTTTGCTGACAAGAAGAACACGTCCAGTGATAGCAGTAAACCAGCTT
EST: gi|22546264|gb|BU098575.1|BU098575
EST:     ACCGAACCTTTTTTCATCGCCTTCTCAGCAAAAAACACCAGATTACAGTG                         GTATGTTTGCTGACAAGAAGAACACGTCCAGTGATAGCAGTAAACCACCTT
genomic: ACCGAACCTTTTTTCATCGCCTTCTCAGCAAAAAACACCAGATTACAGTGgtacggctac ... tgacatccagGTATGTTTGCTGACAAGAAGAACACGTCCAGTGATAGCAGTAAACCAGCTT
EST: gi|149014128|gb|EE043668.2|EE043668
EST:     CCGAACCTTTTTTCATCGCCTTCTCAGCNNNNNNNCACCAGATTACAGTG                         GTATGTTTGCTGACAAGAAGAACACGTCCAGTGATAGCAGTAAACCACCTT
genomic: CCGAACCTTTTTTCATCGCCTTCTCAGCAAAAAA-CACCAGATTACAGTGgtacggctac ... tgacatccagGTATGTTTGCTGACAAGAAGAACACGTCCAGTGATAGCAGTAAACCAGCTT
EST: gi|71311913|gb|DR792440.1|DR792440
EST:     ACCGAACCTTTTTTCATCGCCTTCTCAGCAAAAAACACCAGATTACAGTG                         GTATGTTTGCTGACAAGAAGAACACGTCCAGTGATAGCAGTAAACCAGCTT
genomic: ACCGAACCTTTTTTCATCGCCTTCTCAGCAAAAAACACCAGATTACAGTGgtacggctac ... tgacatccagGTATGTTTGCTGACAAGAAGAACACGTCCAGTGATAGCAGTAAACCAGCTT
EST: gi|76915806|gb|DV166129.1|DV166129
EST:     ACCGAACCTTTTTTCATCGCCTTCTCAGCAAAAAACACCAGATTACAGTG                         GTATGTTTGCTGACAAGAAGAACACGTCCAGTGATAGCAGTAAA
genomic: ACCGAACCTTTTTTCATCGCCTTCTCAGCAAAAAACACCAGATTACAGTGgtacggctac ... tgacatccagGTATGTTTGCTGACAAGAAGAACACGTCCAGTGATAGCAGTAAA
EST: gi|13558335|gb|BG549691.1|BG549691
EST:     ACCGAACCTTTTTTCATCGCCTTCTCAGCAAAAAACACCAGATTACAGTG                         GTATGTTTGCTGACAAGAAGAACACGTCCAGTGATAGCAGTAAACCAGCTT
genomic: ACCGAACCTTTTTTCATCGCCTTCTCAGCAAAAAACACCAGATTACAGTGgtacggctac ... tgacatccagGTATGTTTGCTGACAAGAAGAACACGTCCAGTGATAGCAGTAAACCAGCTT
EST: gi|94473209|gb|EB702167.1|EB702167
EST:     ACCGAACCTTTTTTCATCGCCTTCTCAGCAAAAA-CACCAGAATACAGTG                         GTATGTTTGCTGACAAGAAGAACACGTCCAGTGATAGCAGTAAACCAGCTT
genomic: ACCGAACCTTTTTTCATCGCCTTCTCAGCAAAAAACACCAGATTACAGTGgtacggctac ... tgacatccagGTATGTTTGCTGACAAGAAGAACACGTCCAGTGATAGCAGTAAACCAGCTT
EST: gi|78105254|gb|DV523672.1|DV523672
EST:     ACCGAACCTTTTTTCATCGCCTTCTCAGCAAAAAACACCAGATTACAGTG                         GTATGTTTGCTGACAAGAAGAACACGTTCAGTGATAGCAGTAAACCA
genomic: ACCGAACCTTTTTTCATCGCCTTCTCAGCAAAAAACACCAGATTACAGTGgtacggctac ... tgacatccagGTATGTTTGCTGACAAGAAGAACACGTCCAGTGATAGCAGTAAACCA
EST: gi|88757793|gb|DY541934.1|DY541934
EST:     ACCGAACCTTTTTTCATCGCCTTCTCAGCAAAAAACACCAGATTACAGTG                         GTATGTTTGCTGACAAG
genomic: ACCGAACCTTTTTTCATCGCCTTCTCAGCAAAAAACACCAGATTACAGTGgtacggctac ... tgacatccagGTATGTTTGCTGACAAG
EST: gi|26558697|gb|CA830932.1|CA830932
EST:     ACCGAACCTTTTTTCATCGCCTTCTCAGCAAAAAACACCAGATTACAGTG                         GTATGTTTGCTGACAAGAAGAACACGTCCAGTGATAGCAGTAAACCACCTT
genomic: ACCGAACCTTTTTTCATCGCCTTCTCAGCAAAAAACACCAGATTACAGTGgtacggctac ... tgacatccagGTATGTTTGCTGACAAGAAGAACACGTCCAGTGATAGCAGTAAACCAGCTT