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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCCGGCTCGAGCGGCTAGGGTTTCGGGAGTGCGCGGTGAGACGGCATGACAACGCGGGGAGCTAAGCGCGCGGCCACCTCCGACCCCGCCGCACCCGATgtgcgctcccttccatcctttcatctgaattgcgtttttccgcggcgatgtgtactgtttgttttgaggcaaccagtgttgcgaaaaagctgtggatctt...

Basic information

species Zea mays
transcript GRMZM2G086484_T02
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211283774|gb|FL132376.1|FL132376
EST:     CAACGCGGGGAGCTAAGCGCGCGGCCACCTCCGACCCCGCCGCACCCGAT                         TTACCAAGTAAGAGAGTAATGGACGGACCCTCTTTTGATGTTCACAGGGCG
genomic: CAACGCGGGGAGCTAAGCGCGCGGCCACCTCCGACCCCGCCGCACCCGATgtgcgctccc ... tacaatgcagTTACCAAGTAAGAGAGTAATGGACGGACCCTCTTTTGATGTTCACAGGGCG
EST: gi|31361452|gb|CD445809.1|CD445809
EST:     CAACGCGGGGAGCTAAACGCGCGGCCACCTCCGACCCCGCCGCACCCGAT                         TTACCAAGTAAGAGAGTAATGGACGGACCCTCTTTTGATGTTCACAGGGCG
genomic: CAACGCGGGGAGCTAAGCGCGCGGCCACCTCCGACCCCGCCGCACCCGATgtgcgctccc ... tacaatgcagTTACCAAGTAAGAGAGTAATGGACGGACCCTCTTTTGATGTTCACAGGGCG
EST: gi|33467333|gb|CF244382.1|CF244382
EST:     AACGCGGCGGAGCTAAGCGCGCGGCCACCTCCGACCCCGCCGCACCCGAT                         TTACCAAGTAAGAGAGTAATGGACGGACCCTCTTTTGATGTCTCACAGGGC
genomic: AACGCGG-GGAGCTAAGCGCGCGGCCACCTCCGACCCCGCCGCACCCGATgtgcgctccc ... tacaatgcagTTACCAAGTAAGAGAGTAATGGACGGACCCTCTTTTGATGT-TCACAGGGC
EST: gi|149014128|gb|EE043668.2|EE043668
EST:     CAACGCGGGGAGCTAAGCGCGCGGCCACCTCCGACCCCGCCGCACCCGAT                         TTACCAAGTAAGAGAGTAATGGACGGACCCTCTTTTGATGTTCACAGGGCG
genomic: CAACGCGGGGAGCTAAGCGCGCGGCCACCTCCGACCCCGCCGCACCCGATgtgcgctccc ... tacaatgcagTTACCAAGTAAGAGAGTAATGGACGGACCCTCTTTTGATGTTCACAGGGCG
EST: gi|71311913|gb|DR792440.1|DR792440
EST:     CAACGCGGGGAGCTAAGCGCGCGGCCACCTCCGACCCCGCCGCACCCGAT                         TTACCAAGTAAGAGAGTAATGGACGGACCCTCTTTTGATGTTCACAGGGCG
genomic: CAACGCGGGGAGCTAAGCGCGCGGCCACCTCCGACCCCGCCGCACCCGATgtgcgctccc ... tacaatgcagTTACCAAGTAAGAGAGTAATGGACGGACCCTCTTTTGATGTTCACAGGGCG
EST: gi|71448533|gb|DR829583.1|DR829583
EST:     CAACGCGGGGAGCTAAGCGCGCGGCCACCTCCGACCCCGCCGCACCCGAT                         TTACCAAGTAAGAGAGTAATGGACGGACCCTCTTTTGATGTTCACAGGGCG
genomic: CAACGCGGGGAGCTAAGCGCGCGGCCACCTCCGACCCCGCCGCACCCGATgtgcgctccc ... tacaatgcagTTACCAAGTAAGAGAGTAATGGACGGACCCTCTTTTGATGTTCACAGGGCG
EST: gi|211283778|gb|FL132380.1|FL132380
EST:     CAACGCGGGGAGCTAAGCGCGCGGCCACCTCCGACCCCGCCGCACCCGAT                         TTACCAAGTAAGAGAGTAATGGACGGACCCTCTTTTGATGTTCACAGGGCG
genomic: CAACGCGGGGAGCTAAGCGCGCGGCCACCTCCGACCCCGCCGCACCCGATgtgcgctccc ... tacaatgcagTTACCAAGTAAGAGAGTAATGGACGGACCCTCTTTTGATGTTCACAGGGCG
EST: gi|50334338|gb|CO529464.1|CO529464
EST:     CAACGCGGGGAGCTAAGCGCGCGGCCACCTCCGACCCCGCCGCACCCGAT                         TTACCAAGTAAGAGAGTAATGGACGGACCCTCTTTTGATGTTCACAGGGCG
genomic: CAACGCGGGGAGCTAAGCGCGCGGCCACCTCCGACCCCGCCGCACCCGATgtgcgctccc ... tacaatgcagTTACCAAGTAAGAGAGTAATGGACGGACCCTCTTTTGATGTTCACAGGGCG
EST: gi|211283773|gb|FL132375.1|FL132375
EST:     CAACGCGGGGAGCTAAGCGCGCGGCCACCTCCGACCCCGCCGCACCCGAT                         TTACCAAGTAAGAGAGTAATGGACGGACCCTCTTTTGATGTTCACAGGGCG
genomic: CAACGCGGGGAGCTAAGCGCGCGGCCACCTCCGACCCCGCCGCACCCGATgtgcgctccc ... tacaatgcagTTACCAAGTAAGAGAGTAATGGACGGACCCTCTTTTGATGTTCACAGGGCG
EST: gi|28987141|gb|CB351484.1|CB351484
EST:     CAACGCGGGGAGCTAAGCGCGCGGCCACCTCCGACCCCGCCGCACCCGAT                         TTACCAAGTAAGAGAGTAATGGACGGACCCTCTTTTGATGTTCACAGGGCG
genomic: CAACGCGGGGAGCTAAGCGCGCGGCCACCTCCGACCCCGCCGCACCCGATgtgcgctccc ... tacaatgcagTTACCAAGTAAGAGAGTAATGGACGGACCCTCTTTTGATGTTCACAGGGCG
EST: gi|76915806|gb|DV166129.1|DV166129
EST:     CAACGCGGGGAGCTAAGCGCGCGGCCACCTCCGACCCCGCCGCACCCGAT                         TTACCAAGTAAGAGAGTAATGGACGGACCCTCTTTTGATGTTCACAGGGCG
genomic: CAACGCGGGGAGCTAAGCGCGCGGCCACCTCCGACCCCGCCGCACCCGATgtgcgctccc ... tacaatgcagTTACCAAGTAAGAGAGTAATGGACGGACCCTCTTTTGATGTTCACAGGGCG
EST: gi|94473209|gb|EB702167.1|EB702167
EST:     CAACGCGGGGAGCTAAGCGCGCGGCCACCTCCGACCCCGCCGCACCCGAT                         TTACCAAGTAAGAGAGTAATGGACGGACCCTCTTTTGATGTTCACAGGGCG
genomic: CAACGCGGGGAGCTAAGCGCGCGGCCACCTCCGACCCCGCCGCACCCGATgtgcgctccc ... tacaatgcagTTACCAAGTAAGAGAGTAATGGACGGACCCTCTTTTGATGTTCACAGGGCG
EST: gi|94473338|gb|EB702296.1|EB702296
EST:     CAACGCGGGGAGCTAAGCGCGCGGCCACCTCCGACCCCGCCGCACCCGAT                         TTACCAAGTAAGAGAGTAATGGACGGACCCTCTTTTGATGTTCACAGGGCG
genomic: CAACGCGGGGAGCTAAGCGCGCGGCCACCTCCGACCCCGCCGCACCCGATgtgcgctccc ... tacaatgcagTTACCAAGTAAGAGAGTAATGGACGGACCCTCTTTTGATGTTCACAGGGCG
EST: gi|78105254|gb|DV523672.1|DV523672
EST:     CAACGCGGGGAGCTAAGCGCGCGGCCACCTCCGACCCCGCCGCACCCGAT                         TTACCAAGTAAGAGAGTAATGGACGGACCCTCTTTTGATGTTCACAGGGCG
genomic: CAACGCGGGGAGCTAAGCGCGCGGCCACCTCCGACCCCGCCGCACCCGATgtgcgctccc ... tacaatgcagTTACCAAGTAAGAGAGTAATGGACGGACCCTCTTTTGATGTTCACAGGGCG
EST: gi|88757793|gb|DY541934.1|DY541934
EST:     CAACGCGGGGAGCTAAGCGCGCGGCCACCTCCGACCCCGCCGCACCCGAT                         TTACCAAGTAAGAGAGTAATGGACGGACCCTCTTTTGATGTTCACAGGGCG
genomic: CAACGCGGGGAGCTAAGCGCGCGGCCACCTCCGACCCCGCCGCACCCGATgtgcgctccc ... tacaatgcagTTACCAAGTAAGAGAGTAATGGACGGACCCTCTTTTGATGTTCACAGGGCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCCCGGCTCGAGCGGCTAGGGTTTCGGGAGTGCGCGGTGAGACGGCATGACAACGCGGGGAGCTAAGCGCGCGGCCACCTCCGACCCCGCCGCACCCGATgtgcgctcccttccatcctttcatctgaattgcgtttttccgcggcgatgtgtactgtttgttttgaggcaaccagtgttgcgaaaaagctgtggatctt

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